Search result

BaseInfo

ncRNA ID	novel_zma_miR11609
Species	Zea mays
Class	miRNA
Genome position	Chr4:153362721-153362776 [+]
Reference genome	RefGen_v4
Source	SRR5100255
Length	24
Mature sequence(if miRNA)	1 - AUGAGAUUGAGAUGUAUUUUGACU - 24
Stem-loop(if miRNA)	--   A       A  UAU     C  AU   AUG GAUUGAG UG   UUUGA UU  U   ||| ||||||| ||   ||||| ||   UAC CUAACUC AC   AAAUU AA  A UC   C       A  --U     U  GU
Stem-loop sequence	AUGAGAUUGAGAUGUAUUUUGACUUAUUAUGAAUUUAAAUCAACUCAAUCCCAUCU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_008681684.2	ncRNA:24   UCAGUUUUAUGUAGAGUUAGAGUA   1   |||||||||||||||||||||||* targets:2865   AGUCAAAAUACAUCUCAAUCUCAC   2888 Target Full Sequence	1.0	PREDICTED: Zea mays pyrophosphate-energized vacuolar membrane proton pump (LOC103654862), mRNA	NA	coding protein	psRNATarget
JB167351.1	ncRNA:24   UCAGUUUUAUGUAGAGUUAGAGUA   1   |||||||||||||||||||||||* targets:81   AGUCAAAAUACAUCUCAAUCUCAC   104 Target Full Sequence	1.0	Sequence 5015 from Patent EP2559767	NA	coding protein	psRNATarget
LQ239020.1	ncRNA:24   UCAGUUUUAUGUAGAGUUAGAGUA   1   |||||||||||||||||||||||* targets:81   AGUCAAAAUACAUCUCAAUCUCAC   104 Target Full Sequence	1.0	Sequence 5015 from Patent EP2985353	NA	coding protein	psRNATarget
HI406890.1	ncRNA:24   UCAGUUUUAUGUAGAGUUAGAGUA   1   |||||||||||||||||||||||* targets:81   AGUCAAAAUACAUCUCAAUCUCAC   104 Target Full Sequence	1.0	Sequence 5015 from Patent EP2074227	NA	coding protein	psRNATarget
XM_008660051.2	ncRNA:24   UCAGUUUUAUGUAGAGUUAGAGUA   1   ||||||||||||||||||||*||| targets:1573   AGUCAAAAUACAUCUCAAUCCCAU   1596 Target Full Sequence	1.5	PREDICTED: Zea mays putative MADS-box transcription factor family protein (MADS71), transcript variant X1, mRNA	NA	coding protein	psRNATarget