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BaseInfo

ncRNA ID	novel_zma_miR11597
Species	Zea mays
Class	miRNA
Genome position	Chr10:27057333-27057447 [-]
Reference genome	RefGen_v4
Source	SRR5100255
Length	24
Mature sequence(if miRNA)	1 - UCAUCAUACGUGUGAGACUUGGUC - 24
Stem-loop(if miRNA)	--   UU     ---         U      -UUA  UAUUUUGUACAGAACUCUUAUUA   UCA  GUCUU   CGUAUGAUG AAUUAU    UU                       U   |||  |||||   ||||||||| ||||||    ||                       A   GGU  CAGAG   GCAUACUAC UUAGUA    GU                       U CU   -U     UGU         -      CCAG  UUUUGCAUACAGUAUAGAAAUGA
Stem-loop sequence	UCAUUGUCUUCGUAUGAUGUAAUUAUUUAUUUAUUUUGUACAGAACUCUUAUUAUAUAGUAAAGAUAUGACAUACGUUUUUGGACCAUGAUUCAUCAUACGUGUGAGACUUGGUC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
EZ105285.1	ncRNA:24   CUGGUUCAGAGUGUGCAUACUACU   1   |||||||||||||||*|||||||| targets:60   GACCAAGUCUCACACAUAUGAUGA   83 Target Full Sequence	1.5	TSA: Zea mays contig40942, mRNA sequence	NA	coding protein	psRNATarget
HI409359.1	ncRNA:24   CUGGUUCAGAGUGUGCAUACUACU   1   |||||||||||||||*|||||||| targets:20   GACCAAGUCUCACACAUAUGAUGA   43 Target Full Sequence	1.5	Sequence 7484 from Patent EP2074227	NA	coding protein	psRNATarget
JB169820.1	ncRNA:24   CUGGUUCAGAGUGUGCAUACUACU   1   |||||||||||||||*|||||||| targets:20   GACCAAGUCUCACACAUAUGAUGA   43 Target Full Sequence	1.5	Sequence 7484 from Patent EP2559767	NA	coding protein	psRNATarget
LQ241489.1	ncRNA:24   CUGGUUCAGAGUGUGCAUACUACU   1   |||||||||||||||*|||||||| targets:20   GACCAAGUCUCACACAUAUGAUGA   43 Target Full Sequence	1.5	Sequence 7484 from Patent EP2985353	NA	coding protein	psRNATarget
EZ108461.1	ncRNA:24   CUGGUUCAGAGUGUGCAUACUACU   1   |||||||||||||||*|||||||* targets:51   GACCAAGUCUCACACAUAUGAUGU   74 Target Full Sequence	2.5	TSA: Zea mays contig44120, mRNA sequence	NA	coding protein	psRNATarget
EU940868.1	ncRNA:24   CUGGUUCAGAGUGUGCAUACUACU   1   |||||||||||||||*|||||||* targets:670   GACCAAGUCUCACACAUAUGAUGU   693 Target Full Sequence	2.5	Zea mays clone 1165273 mRNA sequence	NA	coding protein	psRNATarget
EU974341.1	ncRNA:24   CUGGUUCAGAGUGUGCAUACUACU   1   ||=||||||||||||*|||||||= targets:1029   GAUCAAGUCUCACACAUAUGAUGG   1052 Target Full Sequence	2.5	Zea mays clone 446742 hypothetical protein mRNA, complete cds	NA	coding protein	psRNATarget
EZ111999.1	ncRNA:24   CUGGUUCAGAGUGUGCAUACUACU   1   ||=|||*||||||||*|||||||| targets:106   GAUCAAAUCUCACACAUAUGAUGA   129 Target Full Sequence	2.5	TSA: Zea mays contig47660, mRNA sequence	NA	coding protein	psRNATarget