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BaseInfo

ncRNA ID	novel_zma_miR11577
Species	Zea mays
Class	miRNA
Genome position	Chr3:9141775-9141949 [-]
Reference genome	RefGen_v4
Source	SRR5100255
Length	24
Mature sequence(if miRNA)	1 - AAAAAGGAAUAAAAUCUAGGGACU - 24
Stem-loop(if miRNA)	--                                                          A   CC   A      UCUAUUU     C   UCCCUAGAUUUUAUUCCUUUUUAGUGUAUAAAUUGCUAAAUAUAGAAACUAAAAUAAA GUU  UAG UUUUAU       UAGUU C   |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||  ||| ||||||       |||||   AGGGAUCUAAAAUAAGGAAAAAUCACAUAUUUAACGAUUUAUAUCUUUGAUUUUAUUU CAA  AUC AAGAUA       AUUAA A UC                                                          -   -A   A      -UAAACC     A
Stem-loop sequence	UCCCUAGAUUUUAUUCCUUUUUAGUGUAUAAAUUGCUAAAUAUAGAAACUAAAAUAAAAGUUCCUAGAUUUUAUUCUAUUUUAGUUCCAAAAUUACCAAAUAUAGAAACUAAAACUUUAUUUUAGUUUCUAUAUUUAGCAAUUUAUACACUAAAAAGGAAUAAAAUCUAGGGACU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
EZ052166.1	ncRNA:24   UCAGGGAUCUAAAAUAAGGAAAAA   1   |||||||||||||||||||*|||| targets:779   AGUCCCUAGAUUUUAUUCCAUUUU   802 Target Full Sequence	1.5	TSA: Zea mays contig53286, mRNA sequence	NA	coding protein	psRNATarget
EU956227.1	ncRNA:24   UCAGGGAUCUAAAAUAAGGAAAAA   1   |||||||**||||||||||||||| targets:1269   AGUCCCUUCAUUUUAUUCCUUUUU   1292 Target Full Sequence	2.0	Zea mays clone 1559264 mRNA sequence	NA	coding protein	psRNATarget
XM_020542840.1	ncRNA:24   UCAGGGAUCUAAAAUAAGGAAAAA   1   ||||||||*||||||||||*|||| targets:999   AGUCCCUACAUUUUAUUCCAUUUU   1022 Target Full Sequence	2.5	PREDICTED: Zea mays hypothetical protein (LOC103636172), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_008650754.2	ncRNA:24   UCAGGGAUCUAAAAUAAGGAAAAA   1   |||||||**||||||||||||||| targets:1182   AGUCCCUUCAUUUUAUUCCUUUUU   1205 Target Full Sequence	2.0	PREDICTED: Zea mays MADS-box transcription factor 30 (LOC103629660), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_008650753.2	ncRNA:24   UCAGGGAUCUAAAAUAAGGAAAAA   1   |||||||**||||||||||||||| targets:1176   AGUCCCUUCAUUUUAUUCCUUUUU   1199 Target Full Sequence	2.0	PREDICTED: Zea mays MADS-box transcription factor 30 (LOC103629660), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_008650758.2	ncRNA:24   UCAGGGAUCUAAAAUAAGGAAAAA   1   |||||||**||||||||||||||| targets:1173   AGUCCCUUCAUUUUAUUCCUUUUU   1196 Target Full Sequence	2.0	PREDICTED: Zea mays MADS-box transcription factor 30 (LOC103629660), transcript variant X3, mRNA	NA	coding protein	psRNATarget
XM_008650759.2	ncRNA:24   UCAGGGAUCUAAAAUAAGGAAAAA   1   |||||||**||||||||||||||| targets:1164   AGUCCCUUCAUUUUAUUCCUUUUU   1187 Target Full Sequence	2.0	PREDICTED: Zea mays MADS-box transcription factor 30 (LOC103629660), transcript variant X4, mRNA	NA	coding protein	psRNATarget
EU942443.1	ncRNA:24   UCAGGGAUCUAAAAUAAGGAAAAA   1   |||||||**||||||||||||||| targets:492   AGUCCCUUCAUUUUAUUCCUUUUU   515 Target Full Sequence	2.0	Zea mays clone 1501876 mRNA sequence	NA	coding protein	psRNATarget
HI407221.1	ncRNA:24   UCAGGGAUCUAAAAUAAGGAAAAA   1   |||||||**||||||||||||||| targets:9   AGUCCCUUCAUUUUAUUCCUUUUU   32 Target Full Sequence	2.0	Sequence 5346 from Patent EP2074227	NA	coding protein	psRNATarget
JB167682.1	ncRNA:24   UCAGGGAUCUAAAAUAAGGAAAAA   1   |||||||**||||||||||||||| targets:9   AGUCCCUUCAUUUUAUUCCUUUUU   32 Target Full Sequence	2.0	Sequence 5346 from Patent EP2559767	NA	coding protein	psRNATarget
LQ239351.1	ncRNA:24   UCAGGGAUCUAAAAUAAGGAAAAA   1   |||||||**||||||||||||||| targets:9   AGUCCCUUCAUUUUAUUCCUUUUU   32 Target Full Sequence	2.0	Sequence 5346 from Patent EP2985353	NA	coding protein	psRNATarget
NM_001139183.1	ncRNA:24   UCAGGGAUCUAAAAUAAGGAAAAA   1   ||||=|||*||||||||||*|||| targets:842   AGUCUCUACAUUUUAUUCCAUUUU   865 Target Full Sequence	2.5	Zea mays hypothetical protein (LOC100194130), mRNA	NA	coding protein	psRNATarget
BT036582.1	ncRNA:24   UCAGGGAUCUAAAAUAAGGAAAAA   1   ||||=|||*||||||||||*|||| targets:842   AGUCUCUACAUUUUAUUCCAUUUU   865 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0124H18 mRNA, complete cds	NA	coding protein	psRNATarget
XM_020553397.1	ncRNA:24   UCAGGGAUCUAAAAUAAGGAAAAA   1   |||=||||*||||||||||*|||| targets:579   AGUUCCUACAUUUUAUUCCAUUUU   602 Target Full Sequence	2.5	PREDICTED: Zea mays SANT/MYB protein (LOC100284980), transcript variant X1, mRNA	NA	coding protein	psRNATarget
JB163522.1	ncRNA:24   UCAGGGAUCUAAAAUAAGGAAAAA   1   |||||=|**||||||||||||||| targets:29   AGUCCUUUUAUUUUAUUCCUUUUU   52 Target Full Sequence	3.0	Sequence 1186 from Patent EP2559767	NA	coding protein	psRNATarget
LQ235191.1	ncRNA:24   UCAGGGAUCUAAAAUAAGGAAAAA   1   |||||=|**||||||||||||||| targets:29   AGUCCUUUUAUUUUAUUCCUUUUU   52 Target Full Sequence	3.0	Sequence 1186 from Patent EP2985353	NA	coding protein	psRNATarget
HI403061.1	ncRNA:24   UCAGGGAUCUAAAAUAAGGAAAAA   1   |||||=|**||||||||||||||| targets:29   AGUCCUUUUAUUUUAUUCCUUUUU   52 Target Full Sequence	3.0	Sequence 1186 from Patent EP2074227	NA	coding protein	psRNATarget
XM_008656457.2	ncRNA:24   UCAGGGAUCUAAAAUAAGGAAAAA   1   |||||||**||||||||||||||* targets:1672   AGUCCCUUCAUUUUAUUCCUUUUA   1695 Target Full Sequence	3.0	PREDICTED: Zea mays programmed cell death protein 2 (LOC103634523), transcript variant X5, mRNA	NA	coding protein	psRNATarget