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BaseInfo

ncRNA ID novel_zma_miR11559
Species Zea mays
Class miRNA
Genome position Chr8:33528435-33528532 [+]
Reference genome RefGen_v4
Source SRR1997865
Length 24
Mature sequence(if miRNA) 1 - AGGAUAUUUACACUGGCGGUUGGU - 24
Stem-loop(if miRNA) --         A                           CA   A    
  AGGAUAUUU CACUGGCGGUUGGUGUAAUAGAACCGC  GUG AAAUC
  ||||||||| |||||||||||||||||||||||||||  ||| ||||U
  UCCUAUAAA GUGACCGCCAACCACAUUGUCUUGGCG  CAC UUUAA
UA         G                           -C   C    
Stem-loop sequence AGGAUAUUUACACUGGCGGUUGGUGUAAUAGAACCGCCAGUGAAAAUCUAAUUUCCACCGCGGUUCUGUUACACCAACCGCCAGUGGAAAUAUCCUAU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
EZ101180.1
ncRNA:24   UGGUUGGCGGUCACAUUUAUAGGA   1
  ||||||||||||||*|||||||||
targets:78   ACCAACCGCCAGUGGAAAUAUCCU   101

1.5 TSA: Zea mays contig36836, mRNA sequence NA coding protein psRNATarget