Search result

BaseInfo

ncRNA ID novel_zma_miR11546
Species Zea mays
Class miRNA
Genome position Chr3:23432335-23432434 [+]
Reference genome RefGen_v4
Source SRR5100255
Length 24
Mature sequence(if miRNA) 77 - CUCGGCAAAGAAUAUGGCACUCGA - 100
Stem-loop(if miRNA) --       ---      UA     GG      G  U        A     A
  GAGUGUU   UUCUUU  CCGAG  UUUUUU UG GGCACUCG CAAAG G
  |||||||   ||||||  |||||  |||||| || |||||||| ||||| U
  CUCACGG   AAGAAA  GGCUC  GAAAAA AC CCGUGAGC GUUUC U
AG       UAU      -C     AU      A  -        C     U
Stem-loop sequence GAGUGUUUUCUUUUACCGAGGGUUUUUUGUGUGGCACUCGACAAAGAGUUUCUUUGCCGAGUGCCCAAAAAAAGUACUCGGCAAAGAAUAUGGCACUCGA

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
BT042352.1
ncRNA:24   AGCUCACGGUAUAAGAAACGGCUC   1
  *||||||=|||||||||||||||*
targets:1212   CCGAGUGUCAUAUUCUUUGCCGAU   1235

2.0 Zea mays full-length cDNA clone ZM_BFb0207J05 mRNA, complete cds NA coding protein psRNATarget
NM_001148473.2
ncRNA:24   AGCUCACGGUAUAAGAAACGGCUC   1
  *||||||=|||||||||||||||*
targets:1262   CCGAGUGUCAUAUUCUUUGCCGAU   1285

2.0 Zea mays Protein CHLORORESPIRATORY REDUCTION 6 chloroplastic (si707021b11), mRNA NA coding protein psRNATarget