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BaseInfo

ncRNA ID	novel_zma_miR11544
Species	Zea mays
Class	miRNA
Genome position	Chr3:218285834-218286002 [-]
Reference genome	RefGen_v4
Source	SRR5100255
Length	24
Mature sequence(if miRNA)	1 - AAGACACUCGGCAAAGAGCUUCUU - 24
Stem-loop(if miRNA)	---                   G     G                 CC              AAAAAAAGACACUCGGCAAAGAA    GAGCUCUUUGCCGAGUGUU UAUUU UGACACUCGGCAAAGAG  CUUUGCCGAGUGUC                       A    ||||||||||||||||||| ||||| |||||||||||||||||  ||||||||||||||    UUCGAGAAACGGCUCACAG AUAAA ACUGUGAGCCGUUUCUC  AGAAACGGCUCACA                       C UUC                   A     A                 AA              GAAAAAAACUGUGAGCCGUUUCU
Stem-loop sequence	GAGCUCUUUGCCGAGUGUUGUAUUUGUGACACUCGGCAAAGAGCCCUUUGCCGAGUGUCAAAAAAAGACACUCGGCAAAGAAACUCUUUGCCGAGUGUCAAAAAAAGACACUCGGCAAAGAAACUCUUUGCCGAGUGUCAAAAAUAAGACACUCGGCAAAGAGCUUCUU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
JB167154.1	ncRNA:24   UUCUUCGAGAAACGGCUCACAGAA   1   ||||-||||||||||||||||=|| targets:103   AAGA-GCUCUUUGCCGAGUGUUUU   125 Target Full Sequence	1.5	Sequence 4818 from Patent EP2559767	NA	coding protein	psRNATarget
JB167154.1	ncRNA:24   UUCUUCGAGAAACGGCUCACAGAA   1   ||||-|||||||||||||||||** targets:63   AAGA-GCUCUUUGCCGAGUGUCAA   85 Target Full Sequence	2.5	Sequence 4818 from Patent EP2559767	NA	coding protein	psRNATarget
LQ238823.1	ncRNA:24   UUCUUCGAGAAACGGCUCACAGAA   1   ||||-||||||||||||||||=|| targets:103   AAGA-GCUCUUUGCCGAGUGUUUU   125 Target Full Sequence	1.5	Sequence 4818 from Patent EP2985353	NA	coding protein	psRNATarget
LQ238823.1	ncRNA:24   UUCUUCGAGAAACGGCUCACAGAA   1   ||||-|||||||||||||||||** targets:63   AAGA-GCUCUUUGCCGAGUGUCAA   85 Target Full Sequence	2.5	Sequence 4818 from Patent EP2985353	NA	coding protein	psRNATarget
HI406693.1	ncRNA:24   UUCUUCGAGAAACGGCUCACAGAA   1   ||||-||||||||||||||||=|| targets:103   AAGA-GCUCUUUGCCGAGUGUUUU   125 Target Full Sequence	1.5	Sequence 4818 from Patent EP2074227	NA	coding protein	psRNATarget
HI406693.1	ncRNA:24   UUCUUCGAGAAACGGCUCACAGAA   1   ||||-|||||||||||||||||** targets:63   AAGA-GCUCUUUGCCGAGUGUCAA   85 Target Full Sequence	2.5	Sequence 4818 from Patent EP2074227	NA	coding protein	psRNATarget
BT042352.1	ncRNA:24   UUCU---UCGAGAAACGGCUCACAGAA   1   ||*|---||||||||||||||||||*| targets:1196   AAAAUUUAGCUCUUUGCCGAGUGUCAU   1222 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFb0207J05 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001148473.2	ncRNA:24   UUCU---UCGAGAAACGGCUCACAGAA   1   ||*|---||||||||||||||||||*| targets:1246   AAAAUUUAGCUCUUUGCCGAGUGUCAU   1272 Target Full Sequence	1.5	Zea mays Protein CHLORORESPIRATORY REDUCTION 6 chloroplastic (si707021b11), mRNA	NA	coding protein	psRNATarget
EU949560.1	ncRNA:24   UUCUUCGAGAAACGGCUCACAGAA   1   |||=-|=||||||||||||||=|| targets:588   AAGG-GUUCUUUGCCGAGUGUUUU   610 Target Full Sequence	2.5	Zea mays clone 424771 mRNA sequence	NA	coding protein	psRNATarget
LQ238171.1	ncRNA:24   UUCUUCGA-GAAACGGCUCACAGAA   1   =*||||||-|||||||||||||||* targets:135   GCGAAGCUACUUUGCCGAGUGUCUC   159 Target Full Sequence	3.0	Sequence 4166 from Patent EP2985353	NA	coding protein	psRNATarget
JB166502.1	ncRNA:24   UUCUUCGA-GAAACGGCUCACAGAA   1   =*||||||-|||||||||||||||* targets:135   GCGAAGCUACUUUGCCGAGUGUCUC   159 Target Full Sequence	3.0	Sequence 4166 from Patent EP2559767	NA	coding protein	psRNATarget
HI406041.1	ncRNA:24   UUCUUCGA-GAAACGGCUCACAGAA   1   =*||||||-|||||||||||||||* targets:135   GCGAAGCUACUUUGCCGAGUGUCUC   159 Target Full Sequence	3.0	Sequence 4166 from Patent EP2074227	NA	coding protein	psRNATarget