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BaseInfo

ncRNA ID novel_zma_miR11542
Species Zea mays
Class miRNA
Genome position Chr10:56534689-56534735 [-]
Reference genome RefGen_v4
Source SRR5100255
Length 24
Mature sequence(if miRNA) 1 - AGGACACUCGGCAAAGACACUGUU - 24
Stem-loop(if miRNA) ----UAUGA              A
         UUUGCCGAGUGUCU C
         |||||||||||||| A
         AAACGGCUCACAGG U
UUGUCACAG              A
Stem-loop sequence UAUGAUUUGCCGAGUGUCUACAUAGGACACUCGGCAAAGACACUGUU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
EU971646.1
ncRNA:24   UUGUCACAGAAACGGCUCACAGGA   1
  ||=*||||||||||||||||||=*
targets:823   AAUCGUGUCUUUGCCGAGUGUCUA   846

2.5 Zea mays clone 368614 hypothetical protein mRNA, complete cds NA coding protein psRNATarget
HI406639.1
ncRNA:24   UUGUCACAGAAACGGCUCACAGGA   1
  =|==|*|||||||||||||||||*
targets:14   GAUGGAGUCUUUGCCGAGUGUCCC   37

2.0 Sequence 4764 from Patent EP2074227 NA coding protein psRNATarget
LQ238769.1
ncRNA:24   UUGUCACAGAAACGGCUCACAGGA   1
  =|==|*|||||||||||||||||*
targets:14   GAUGGAGUCUUUGCCGAGUGUCCC   37

2.0 Sequence 4764 from Patent EP2985353 NA coding protein psRNATarget
JB167100.1
ncRNA:24   UUGUCACAGAAACGGCUCACAGGA   1
  =|==|*|||||||||||||||||*
targets:14   GAUGGAGUCUUUGCCGAGUGUCCC   37

2.0 Sequence 4764 from Patent EP2559767 NA coding protein psRNATarget