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BaseInfo

ncRNA ID novel_zma_miR11541
Species Zea mays
Class miRNA
Genome position Chr3:235303657-235303783 [+]
Reference genome RefGen_v4
Source SRR5100255
Length 24
Mature sequence(if miRNA) 104 - UCUGGGACACUCGGCAAAGAGCCC - 127
Stem-loop(if miRNA) --  G                      A            GA  UAC            U    
  GC UCUUUGCCGAGUGUCCCGGAUG CACUCGGCAAAG  GU   CUUUGCCGAGUG CUUCC
  || |||||||||||||||||||||| ||||||||||||  ||   |||||||||||| ||||C
  CG AGAAACGGCUCACAGGGUCUAC GUGAGCCGUUUC  CA   GAAAUGGCUCAC GAAGA
CC  -                      C            UA  UAA            -    
Stem-loop sequence GCGUCUUUGCCGAGUGUCCCGGAUGACACUCGGCAAAGGAGUUACCUUUGCCGAGUGUCUUCCCAGAAGCACUCGGUAAAGAAUACAUCUUUGCCGAGUGCCAUCUGGGACACUCGGCAAAGAGCCC

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_008680068.2
ncRNA:24   CCCGAGAAACGGCUCACAGGGUCU   1
  ***|||||||||||||||||*|||
targets:126   AACCUCUUUGCCGAGUGUCCGAGA   149

1.5 PREDICTED: Zea mays uncharacterized LOC103653106 (LOC103653106), mRNA NA coding protein psRNATarget
EU952231.1
ncRNA:24   CCCGAGAAACGGCUCACAGGGUCU   1
  ***=*|||||||||||||||*||=
targets:1443   AAAUACUUUGCCGAGUGUCCAAGG   1466

2.5 Zea mays clone 1234152 mRNA sequence NA coding protein psRNATarget