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BaseInfo

ncRNA ID	novel_zma_miR11540
Species	Zea mays
Class	miRNA
Genome position	Chr3:230742807-230742859 [+]
Reference genome	RefGen_v4
Source	SRR5100255
Length	24
Mature sequence(if miRNA)	1 - UUAUGAAAACCGCCAGUAGAAAUC - 24
Stem-loop(if miRNA)	--   U    A      G           UUA GAAA CCGCCA UAGAAAUCC   ||| |||| |||||| ||||||||A   AAU CUUU GGCGGU AUCUUUAGU AG   U    A      G
Stem-loop sequence	UUAUGAAAACCGCCAGUAGAAAUCCAUGAUUUCUAGUGGCGGAUUUCUUAAGA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
JB163487.1	ncRNA:24   CUAAAGAUGACCGCCAAAAGUAUU   1   ||||||||*|||||||||||*||| targets:9   GAUUUCUAGUGGCGGUUUUCUUAA   32 Target Full Sequence	2.5	Sequence 1151 from Patent EP2559767	NA	coding protein	psRNATarget
HI403026.1	ncRNA:24   CUAAAGAUGACCGCCAAAAGUAUU   1   ||||||||*|||||||||||*||| targets:9   GAUUUCUAGUGGCGGUUUUCUUAA   32 Target Full Sequence	2.5	Sequence 1151 from Patent EP2074227	NA	coding protein	psRNATarget
LQ235156.1	ncRNA:24   CUAAAGAUGACCGCCAAAAGUAUU   1   ||||||||*|||||||||||*||| targets:9   GAUUUCUAGUGGCGGUUUUCUUAA   32 Target Full Sequence	2.5	Sequence 1151 from Patent EP2985353	NA	coding protein	psRNATarget
JB163515.1	ncRNA:24   CUAAAGAUGACCGCCAAAAGUAUU   1   ||||||||*|||||||||||*||| targets:34   GAUUUCUAGUGGCGGUUUUCUUAA   57 Target Full Sequence	2.5	Sequence 1179 from Patent EP2559767	NA	coding protein	psRNATarget
HI403054.1	ncRNA:24   CUAAAGAUGACCGCCAAAAGUAUU   1   ||||||||*|||||||||||*||| targets:34   GAUUUCUAGUGGCGGUUUUCUUAA   57 Target Full Sequence	2.5	Sequence 1179 from Patent EP2074227	NA	coding protein	psRNATarget
LQ235184.1	ncRNA:24   CUAAAGAUGACCGCCAAAAGUAUU   1   ||||||||*|||||||||||*||| targets:34   GAUUUCUAGUGGCGGUUUUCUUAA   57 Target Full Sequence	2.5	Sequence 1179 from Patent EP2985353	NA	coding protein	psRNATarget
HI402984.1	ncRNA:24   CUAAAGAUGACCGCCAAAAGUAUU   1   ||||||||*|||||||||||*||| targets:81   GAUUUCUAGUGGCGGUUUUCUUAA   104 Target Full Sequence	2.5	Sequence 1109 from Patent EP2074227	NA	coding protein	psRNATarget
LQ235114.1	ncRNA:24   CUAAAGAUGACCGCCAAAAGUAUU   1   ||||||||*|||||||||||*||| targets:81   GAUUUCUAGUGGCGGUUUUCUUAA   104 Target Full Sequence	2.5	Sequence 1109 from Patent EP2985353	NA	coding protein	psRNATarget
JB163445.1	ncRNA:24   CUAAAGAUGACCGCCAAAAGUAUU   1   ||||||||*|||||||||||*||| targets:81   GAUUUCUAGUGGCGGUUUUCUUAA   104 Target Full Sequence	2.5	Sequence 1109 from Patent EP2559767	NA	coding protein	psRNATarget
LQ235142.1	ncRNA:24   CUAAAGAUGACCGCCAAAAGUAUU   1   ||||||||*|||||||||||*||| targets:9   GAUUUCUAGUGGCGGUUUUCUUAA   32 Target Full Sequence	2.5	Sequence 1137 from Patent EP2985353	NA	coding protein	psRNATarget
JB163473.1	ncRNA:24   CUAAAGAUGACCGCCAAAAGUAUU   1   ||||||||*|||||||||||*||| targets:9   GAUUUCUAGUGGCGGUUUUCUUAA   32 Target Full Sequence	2.5	Sequence 1137 from Patent EP2559767	NA	coding protein	psRNATarget
HI403012.1	ncRNA:24   CUAAAGAUGACCGCCAAAAGUAUU   1   ||||||||*|||||||||||*||| targets:9   GAUUUCUAGUGGCGGUUUUCUUAA   32 Target Full Sequence	2.5	Sequence 1137 from Patent EP2074227	NA	coding protein	psRNATarget