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BaseInfo

ncRNA ID novel_zma_miR11532
Species Zea mays
Class miRNA
Genome position Chr3:201363009-201363091 [+]
Reference genome RefGen_v4
Source SRR5100255
Length 24
Mature sequence(if miRNA) 1 - CUGUGUUAGCUCGGCGCCAUAGCC - 24
Stem-loop(if miRNA) --   UGU                C                
  CUG   UAGCUCGGCGCCAUAG CUAUGGCGCCGAGCUGU
  |||   |||||||||||||||| ||||||||||||||||G
  GAU   GUCGAGCCGCGGUAUC GAUACCGCGGCUCGAUU
UC   UGU                C                
Stem-loop sequence CUGUGUUAGCUCGGCGCCAUAGCCUAUGGCGCCGAGCUGUGUUAGCUCGGCGCCAUAGCCUAUGGCGCCGAGCUGUGUUAGCU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
NM_001137355.1
ncRNA:24   CCGAUACCGCGGCUCGAUUGUGUC   1
  ||||||||||||||||||||||||
targets:658   GGCUAUGGCGCCGAGCUAACACAG   681

0.0 Zea mays SAUR56-auxin-responsive SAUR family member (LOC100191931), mRNA NA coding protein psRNATarget
BT034188.1
ncRNA:24   CCGAUACCGCGGCUCGAUUGUGUC   1
  ||||||||||||||||||||||||
targets:658   GGCUAUGGCGCCGAGCUAACACAG   681

0.0 Zea mays full-length cDNA clone ZM_BFc0029I19 mRNA, complete cds NA coding protein psRNATarget
EU952087.1
ncRNA:24   CCGAUACCGCGGCUCGAUUGUGUC   1
  ||=||||||||||||*||||||||
targets:849   GGUUAUGGCGCCGAGGUAACACAG   872

1.5 Zea mays clone 1163260 hypothetical protein mRNA, complete cds NA coding protein psRNATarget
NM_001148997.1
ncRNA:24   CCGAUACCGCGGCUCGAUUGUGUC   1
  ||=||||||||||||*||||||||
targets:849   GGUUAUGGCGCCGAGGUAACACAG   872

1.5 Zea mays uncharacterized LOC100274677 (LOC100274677), mRNA NA coding protein psRNATarget
XM_020551169.1
ncRNA:24   CCGAUACCGCGGCUCGAUUGUGUC   1
  |||*=|||||||||||||||||||
targets:1918   GGCCGUGGCGCCGAGCUAACACAG   1941

0.0 PREDICTED: Zea mays subtilisin-like protease SBT3.10 (LOC103652446), transcript variant X3, mRNA NA coding protein psRNATarget
XM_020551168.1
ncRNA:24   CCGAUACCGCGGCUCGAUUGUGUC   1
  |||*=|||||||||||||||||||
targets:1927   GGCCGUGGCGCCGAGCUAACACAG   1950

0.0 PREDICTED: Zea mays subtilisin-like protease SBT3.10 (LOC103652446), transcript variant X1, mRNA NA coding protein psRNATarget
LQ235066.1
ncRNA:24   CCGAUACCGCGGCUCGAUUGUGUC   1
  |*||=||||||||||*||||||||
targets:10   GCCUGUGGCGCCGAGGUAACACAG   33

1.5 Sequence 1061 from Patent EP2985353 NA coding protein psRNATarget
JB163397.1
ncRNA:24   CCGAUACCGCGGCUCGAUUGUGUC   1
  |*||=||||||||||*||||||||
targets:10   GCCUGUGGCGCCGAGGUAACACAG   33

1.5 Sequence 1061 from Patent EP2559767 NA coding protein psRNATarget
HI402936.1
ncRNA:24   CCGAUACCGCGGCUCGAUUGUGUC   1
  |*||=||||||||||*||||||||
targets:10   GCCUGUGGCGCCGAGGUAACACAG   33

1.5 Sequence 1061 from Patent EP2074227 NA coding protein psRNATarget
XM_020541199.1
ncRNA:24   CCGAUACCGCGGCUCGAUUGUGUC   1
  |*|*|||||||||||*||||||||
targets:20   GCCAAUGGCGCCGAGGUAACACAG   43

1.5 PREDICTED: Zea mays protein trichome birefringence-like 10 (LOC109940862), transcript variant X2, mRNA NA coding protein psRNATarget
XM_020541198.1
ncRNA:24   CCGAUACCGCGGCUCGAUUGUGUC   1
  |*|*|||||||||||*||||||||
targets:18   GCCAAUGGCGCCGAGGUAACACAG   41

1.5 PREDICTED: Zea mays protein trichome birefringence-like 10 (LOC109940862), transcript variant X1, mRNA NA coding protein psRNATarget
XM_008655193.2
ncRNA:24   CCGAUACCGCGGCUCGAUUGUGUC   1
  |*|*|||||||||||*||||||||
targets:78   GCCAAUGGCGCCGAGGUAACACAG   101

1.5 PREDICTED: Zea mays protein trichome birefringence-like 10 (LOC103633510), transcript variant X2, mRNA NA coding protein psRNATarget
XM_008655192.2
ncRNA:24   CCGAUACCGCGGCUCGAUUGUGUC   1
  |*|*|||||||||||*||||||||
targets:78   GCCAAUGGCGCCGAGGUAACACAG   101

1.5 PREDICTED: Zea mays protein trichome birefringence-like 10 (LOC103633510), transcript variant X1, mRNA NA coding protein psRNATarget
XM_020539868.1
ncRNA:24   CCGAUACCGCGGCUCGAUUGUGUC   1
  **|**|||||||||||||||=||*
targets:25   AUCAUUGGCGCCGAGCUAACGCAU   48

2.5 PREDICTED: Zea mays vegetative cell wall protein gp1-like (LOC103630924), mRNA NA coding protein psRNATarget
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