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BaseInfo

ncRNA ID novel_zma_miR11524
Species Zea mays
Class miRNA
Genome position Chr3:146390164-146390239 [+]
Reference genome RefGen_v4
Source SRR5100255
Length 19
Mature sequence(if miRNA) 58 - UGUGGGCCCAAUAACUUUU - 76
Stem-loop(if miRNA) --        U   G         -A   ---    AACG
  AAGUUAUU GGU CACAUGCAU  GCC   GUCU    U
  |||||||| ||| |||||||||  |||   ||||
  UUCAAUAA CCG GUGUACGUG  CGG   CAGA    C
UU        C   G         GA   GAA    GUUU
Stem-loop sequence AAGUUAUUUGGUGCACAUGCAUAGCCGUCUAACGUCUUUGAGACAAGGGCAGGUGCAUGUGGGCCCAAUAACUUUU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
LQ241992.1
ncRNA:19   UUUUCAAUAACCCGGGUGU   1
  **|||||||||||||||||
targets:4   CUAAGUUAUUGGGCCCACA   22

2.0 Sequence 7987 from Patent EP2985353 NA coding protein psRNATarget
HI409862.1
ncRNA:19   UUUUCAAUAACCCGGGUGU   1
  **|||||||||||||||||
targets:4   CUAAGUUAUUGGGCCCACA   22

2.0 Sequence 7987 from Patent EP2074227 NA coding protein psRNATarget
JB170323.1
ncRNA:19   UUUUCAAUAACCCGGGUGU   1
  **|||||||||||||||||
targets:4   CUAAGUUAUUGGGCCCACA   22

2.0 Sequence 7987 from Patent EP2559767 NA coding protein psRNATarget
EZ100392.1
ncRNA:19   UUUUCAAUAACCCGGGUGU   1
  **|||||||||||||||||
targets:84   CCAAGUUAUUGGGCCCACA   102

2.0 TSA: Zea mays contig36047, mRNA sequence NA coding protein psRNATarget
BT067946.2
ncRNA:19   UUUUCAAUAACCCGGGUGU   1
  **|||||||||||||||||
targets:405   CCAAGUUAUUGGGCCCACA   423

2.0 Zea mays full-length cDNA clone ZM_BFb0003M08 mRNA, complete cds NA coding protein psRNATarget