Search result

BaseInfo

ncRNA ID	novel_zma_miR11523
Species	Zea mays
Class	miRNA
Genome position	Chr3:138226629-138226691 [+]
Reference genome	RefGen_v4
Source	SRR5100255
Length	24
Mature sequence(if miRNA)	1 - AAAGCACUCGACAAAGAACCUGAC - 24
Stem-loop(if miRNA)	--AA        A       C   A  -   G     AGCACUCG CAAAGAA CUG CA UGG G     |||||||| ||||||| ||| || |||     UUGUGAGC GUUUCUU GGC GU GCC A CCGG        C       A   A  C   C
Stem-loop sequence	AAAGCACUCGACAAAGAACCUGACAUGGGGACCCGCUGACGGAUUCUUUGCCGAGUGUUGGCC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
BT055423.1	ncRNA:24   CAGUCCAAGAAACAGCUCACGAAA   1   ***||*||||||||||||||=||| targets:81   AAAAGUUUCUUUGUCGAGUGUUUU   104 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0179M04 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001165647.1	ncRNA:24   CAGUCCAAGAAACAGCUCACGAAA   1   ***||*||||||||||||||=||| targets:81   AAAAGUUUCUUUGUCGAGUGUUUU   104 Target Full Sequence	2.5	Zea mays uncharacterized LOC100304195 (LOC100304195), mRNA	NA	coding protein	psRNATarget
NM_001152461.1	ncRNA:24   CAGUCCAAGAAACAGCUCACGAAA   1   ***||*||||||||||||||=||| targets:2100   AAAAGUUUCUUUGUCGAGUGUUUU   2123 Target Full Sequence	2.5	Zea mays uncharacterized LOC100279456 (IDP836), mRNA	NA	coding protein	psRNATarget
BT054268.1	ncRNA:24   CAGUCCAAGAAACAGCUCACGAAA   1   ***||*||||||||||||||=||| targets:2100   AAAAGUUUCUUUGUCGAGUGUUUU   2123 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0206G23 mRNA, complete cds	NA	coding protein	psRNATarget
XM_008672265.2	ncRNA:24   CAGUCCAAGAAACAGCUCACGAAA   1   ***|*|||||||||||||||=||| targets:429   AAAAAGUUCUUUGUCGAGUGUUUU   452 Target Full Sequence	1.5	PREDICTED: Zea mays hypothetical protein (LOC103647750), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_008672266.2	ncRNA:24   CAGUCCAAGAAACAGCUCACGAAA   1   ***|*|||||||||||||||=||| targets:681   AAAAAGUUCUUUGUCGAGUGUUUU   704 Target Full Sequence	1.5	PREDICTED: Zea mays hypothetical protein (LOC103647750), transcript variant X2, mRNA	NA	coding protein	psRNATarget
EZ105844.1	ncRNA:24   CAGUCCAAGAAACAGCUCACGAAA   1   ||-|*|||*||||||*|||||||| targets:25   GU-AUGUUGUUUGUCCAGUGCUUU   47 Target Full Sequence	2.5	TSA: Zea mays contig41502, mRNA sequence	NA	coding protein	psRNATarget
EZ062816.1	ncRNA:24   CAGUCCAAGAAACAGCUCACGAAA   1   ||-|*|||*||||||*|||||||| targets:556   GU-AUGUUGUUUGUCCAGUGCUUU   578 Target Full Sequence	2.5	TSA: Zea mays contig63938, mRNA sequence	NA	coding protein	psRNATarget