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BaseInfo

ncRNA ID	novel_zma_miR11516
Species	Zea mays
Class	miRNA
Genome position	Chr2:75976978-75977064 [+]
Reference genome	RefGen_v4
Source	SRR5100255
Length	24
Mature sequence(if miRNA)	1 - UUGAGGAGCCAAGUAGAACAGAGC - 24
Stem-loop(if miRNA)	-UUGA         --U                   AUGU   U      GGAGCCAAG   AGAACAGAGCCGCUCUGUU    GUU G      |||||||||   |||||||||||||||||||    |||      CCUUGGUUU   UUUUGUCUCGGCGAGGCAA    UAA G UGAGA         GUU                   GGUC   U
Stem-loop sequence	UUGAGGAGCCAAGUAGAACAGAGCCGCUCUGUUAUGUGUUUGGUAAUCUGGAACGGAGCGGCUCUGUUUUUUGUUUGGUUCCAGAGU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_020542520.1	ncRNA:24   CGAGACAAGAUGAACCGAGGAGUU   1   ||||*||||||||||||||||||| targets:1768   GCUCCGUUCUACUUGGCUCCUCAA   1791 Target Full Sequence	0.0	PREDICTED: Zea mays putative ubiquitin-conjugating enzyme E2 38 (LOC100502147), transcript variant X2, mRNA	NA	coding protein	psRNATarget
EZ075627.1	ncRNA:24   CGAGACAAGAUGAACCGAGGAGUU   1   ||||*||||||||||||||=|||| targets:8   GCUCCGUUCUACUUGGCUCUUCAA   31 Target Full Sequence	1.5	TSA: Zea mays contig11264, mRNA sequence	NA	coding protein	psRNATarget
XM_020544989.1	ncRNA:24   CGAGACAAGAUGAACCGAGGAGUU   1   *|||*||||||||||||||||||| targets:43   ACUCCGUUCUACUUGGCUCCUCAA   66 Target Full Sequence	0.0	PREDICTED: Zea mays RING/FYVE/PHD zinc finger superfamily protein (umc2749), transcript variant X6, mRNA	NA	coding protein	psRNATarget
XM_020544984.1	ncRNA:24   CGAGACAAGAUGAACCGAGGAGUU   1   *|||*||||||||||||||||||| targets:40   ACUCCGUUCUACUUGGCUCCUCAA   63 Target Full Sequence	0.0	PREDICTED: Zea mays RING/FYVE/PHD zinc finger superfamily protein (umc2749), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_020544988.1	ncRNA:24   CGAGACAAGAUGAACCGAGGAGUU   1   *|||*||||||||||||||||||| targets:37   ACUCCGUUCUACUUGGCUCCUCAA   60 Target Full Sequence	0.0	PREDICTED: Zea mays RING/FYVE/PHD zinc finger superfamily protein (umc2749), transcript variant X5, mRNA	NA	coding protein	psRNATarget
XM_020542825.1	ncRNA:24   CGAGACAAGAUGAACCGAGGAGUU   1   ||||*|||=||||||||||=|||| targets:762   GCUCCGUUUUACUUGGCUCUUCAA   785 Target Full Sequence	2.5	PREDICTED: Zea mays UPF0051 protein ABCI8, chloroplastic-like (LOC109941650), mRNA	NA	coding protein	psRNATarget
XM_008663409.2	ncRNA:24   CGAGACAAGAUGAACCGAGGAGUU   1   |||=*||||||||||||||=|||| targets:1865   GCUUCGUUCUACUUGGCUCUUCAA   1888 Target Full Sequence	1.5	PREDICTED: Zea mays uncharacterized LOC100273701 (LOC100273701), transcript variant X4, mRNA	NA	coding protein	psRNATarget
HI409686.1	ncRNA:24   CGAGACAAGAUGAACCGAGGAGUU   1   *|||*||||||||||||||=|||| targets:164   ACUCCGUUCUACUUGGCUCUUCAA   187 Target Full Sequence	1.5	Sequence 7811 from Patent EP2074227	NA	coding protein	psRNATarget
LQ241816.1	ncRNA:24   CGAGACAAGAUGAACCGAGGAGUU   1   *|||*||||||||||||||=|||| targets:164   ACUCCGUUCUACUUGGCUCUUCAA   187 Target Full Sequence	1.5	Sequence 7811 from Patent EP2985353	NA	coding protein	psRNATarget
JB170147.1	ncRNA:24   CGAGACAAGAUGAACCGAGGAGUU   1   *|||*||||||||||||||=|||| targets:164   ACUCCGUUCUACUUGGCUCUUCAA   187 Target Full Sequence	1.5	Sequence 7811 from Patent EP2559767	NA	coding protein	psRNATarget
LQ240756.1	ncRNA:24   CGAGACAAGAUGAACCGAGGAGUU   1   *=||*||||||||||||||||||| targets:197   AUUCCGUUCUACUUGGCUCCUCAA   220 Target Full Sequence	0.0	Sequence 6751 from Patent EP2985353	NA	coding protein	psRNATarget
HI408626.1	ncRNA:24   CGAGACAAGAUGAACCGAGGAGUU   1   *=||*||||||||||||||||||| targets:197   AUUCCGUUCUACUUGGCUCCUCAA   220 Target Full Sequence	0.0	Sequence 6751 from Patent EP2074227	NA	coding protein	psRNATarget
JB169087.1	ncRNA:24   CGAGACAAGAUGAACCGAGGAGUU   1   *=||*||||||||||||||||||| targets:197   AUUCCGUUCUACUUGGCUCCUCAA   220 Target Full Sequence	0.0	Sequence 6751 from Patent EP2559767	NA	coding protein	psRNATarget
XM_020546669.1	ncRNA:24   CGAGACAAGAUGAACCGAGGAGUU   1   |=|=*|||=||||||||||=|||| targets:85   GUUUCGUUUUACUUGGCUCUUCAA   108 Target Full Sequence	2.5	PREDICTED: Zea mays hypothetical protein (LOC103643194), transcript variant X1, mRNA	NA	coding protein	psRNATarget
EU945197.1	ncRNA:24   CGAGACAAGAUGAACCGAGGAGUU   1   |||**||||||*|||||||||||| targets:209   GCUACGUUCUAAUUGGCUCCUCAA   232 Target Full Sequence	1.5	Zea mays clone 244184 mRNA sequence	NA	coding protein	psRNATarget