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BaseInfo

ncRNA ID	novel_zma_miR11505
Species	Zea mays
Class	miRNA
Genome position	Chr2:20785572-20785652 [-]
Reference genome	RefGen_v4
Source	SRR5100255
Length	24
Mature sequence(if miRNA)	58 - ACUGUUCGGUGAGCCAACGGCGCC - 81
Stem-loop(if miRNA)	--      C   -G     A  --G      ---C  CCAACGG   ACUGUU GGU  AGCCA CG   CGCCCG    GG       U   |||||| |||  ||||| ||   ||||||    ||       C   UGGCAA CCG  UCGGU GC   GCGGGC    AG       A GC      -   AG     -  ACA      AACU  CACGUCU
Stem-loop sequence	ACUGUUCGGUGAGCCAACGGCGCCCGCGGCCAACGGUCAUCUGCACGAUCAACGGGCGACACGUGGCUGAGCCAACGGUCG

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
BT066461.2	ncRNA:24   CCGCGGCAACCGAGUGGCUUGUCA   1   ||-|||||||||||||||=||||| targets:701   GG-GCCGUUGGCUCACCGGACAGU   723 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFb0008E18 mRNA, complete cds	NA	coding protein	psRNATarget
BT068112.2	ncRNA:24   CCG-C-GGCAACCGAGUGGCUUGUCA   1   |||-|-||||||||||||||=||||| targets:573   GGCCGACCGUUGGCUCACCGGACAGU   598 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFb0045K13 mRNA, complete cds	NA	coding protein	psRNATarget
BT061141.2	ncRNA:24   CCG-C-GGCAACCGAGUGGCUUGUCA   1   |||-|-||||||||||||||=||||| targets:709   GGCCGACCGUUGGCUCACCGGACAGU   734 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFb0115B09 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001165868.1	ncRNA:24   CCG-C-GGCAACCGAGUGGCUUGUCA   1   |||-|-||||||||||||||=||||| targets:709   GGCCGACCGUUGGCUCACCGGACAGU   734 Target Full Sequence	1.5	Zea mays uncharacterized LOC100304434 (LOC100304434), mRNA	NA	coding protein	psRNATarget
NM_001175949.1	ncRNA:24   CCG-C-GGCAACCGAGUGGCUUGUCA   1   |||-|-||||||||||||||=||||| targets:670   GGCCGACCGUUGGCUCACCGGACAGU   695 Target Full Sequence	1.5	Zea mays uncharacterized LOC100383289 (LOC100383289), mRNA	NA	coding protein	psRNATarget
BT066811.2	ncRNA:24   CCG-C-GGCAACCGAGUGGCUUGUCA   1   |||-|-||||||||||||||=||||| targets:670   GGCCGACCGUUGGCUCACCGGACAGU   695 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFb0073A15 mRNA, complete cds	NA	coding protein	psRNATarget
BT061124.2	ncRNA:24   CCG-C-GGCAACCGAGUGGCUUGUCA   1   |||-|-||||||||||||||=||||| targets:534   GGCCGACCGUUGGCUCACCGGACAGU   559 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFb0108N24 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001165861.1	ncRNA:24   CCG-C-GGCAACCGAGUGGCUUGUCA   1   |||-|-||||||||||||||=||||| targets:534   GGCCGACCGUUGGCUCACCGGACAGU   559 Target Full Sequence	1.5	Zea mays uncharacterized LOC100304427 (LOC100304427), mRNA	NA	coding protein	psRNATarget
EU940831.1	ncRNA:24   CCG-C-GGCAACCGAGUGGCUUGUCA   1   |||-|-||||||||||||||=||||| targets:382   GGCCGACCGUUGGCUCACCGGACAGU   407 Target Full Sequence	1.5	Zea mays clone 1157596 mRNA sequence	NA	coding protein	psRNATarget
EU940974.1	ncRNA:24   CCG-C-GGCAACCGAGUGGCUUGUCA   1   |||-|-||||||||||||||=||||| targets:2742   GGCCGACCGUUGGCUCACCGGACAGU   2767 Target Full Sequence	1.5	Zea mays clone 1225259 mRNA sequence	NA	coding protein	psRNATarget
JB170463.1	ncRNA:24   CCGC-----GGCAACCGAGUGGCUUGUCA   1   *|||-----||||||||||||||=||||| targets:55   CGCGACCGACCGUUGGCUCACCGGACAGU   83 Target Full Sequence	1.5	Sequence 8127 from Patent EP2559767	NA	coding protein	psRNATarget
HI410002.1	ncRNA:24   CCGC-----GGCAACCGAGUGGCUUGUCA   1   *|||-----||||||||||||||=||||| targets:55   CGCGACCGACCGUUGGCUCACCGGACAGU   83 Target Full Sequence	1.5	Sequence 8127 from Patent EP2074227	NA	coding protein	psRNATarget
LQ242132.1	ncRNA:24   CCGC-----GGCAACCGAGUGGCUUGUCA   1   *|||-----||||||||||||||=||||| targets:55   CGCGACCGACCGUUGGCUCACCGGACAGU   83 Target Full Sequence	1.5	Sequence 8127 from Patent EP2985353	NA	coding protein	psRNATarget
BT065921.2	ncRNA:24   CCGC-GGCAACCGAGUGGCUUGUCA   1   **||-||||||||||||||=||||| targets:688   CCCGACCGUUGGCUCACCGGACAGU   712 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFc0044K19 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001175687.1	ncRNA:24   CCGC-GGCAACCGAGUGGCUUGUCA   1   **||-||||||||||||||=||||| targets:688   CCCGACCGUUGGCUCACCGGACAGU   712 Target Full Sequence	1.5	Zea mays uncharacterized LOC100383005 (LOC100383005), mRNA	NA	coding protein	psRNATarget
BT068871.2	ncRNA:24   CCGC-GGCAACCGAGUGGCUUGUCA   1   **||-|=||||||||||||=||||| targets:681   ACCGACUGUUGGCUCACCGGACAGU   705 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFc0146G02 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001176621.1	ncRNA:24   CCGC-GGCAACCGAGUGGCUUGUCA   1   **||-|=||||||||||||=||||| targets:681   ACCGACUGUUGGCUCACCGGACAGU   705 Target Full Sequence	2.5	Zea mays uncharacterized LOC100384010 (LOC100384010), mRNA	NA	coding protein	psRNATarget
XM_020546123.1	ncRNA:24   CCGC-GGCAACCGAGUGGCUUGUCA   1   |*||-||||||*|||||||=||||| targets:4583   GCCGACCGUUGUCUCACCGGACAGU   4607 Target Full Sequence	2.5	PREDICTED: Zea mays protein NUCLEAR FUSION DEFECTIVE 4-like (LOC103641819), mRNA	NA	coding protein	psRNATarget