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BaseInfo

ncRNA ID novel_zma_miR11497
Species Zea mays
Class miRNA
Genome position Chr2:62844300-62844436 [-]
Reference genome RefGen_v4
Source SRR5100255
Length 24
Mature sequence(if miRNA) 114 - AAUACAACAGCUAUUUUCGUGGGC - 137
Stem-loop(if miRNA) --                    G    UCUUU    G      AUAC   A   --        G    U
  AAUACAACAGCUAUUUUCGU GGCC     GGCC ACGAAA    AGC GCU  AUUUUCGU GGCC U
  |||||||||||||||||||| ||||     |||| ||||||    ||| |||  |||||||| |||| U
  UUAUGUUGUCGAUAAAAGCA CCGG     CCGG UGCUUU    UCG CGA  UAAAAGCA CCGG U
UU                    G    UUGCU    G      --GA   A   CA        G    U
Stem-loop sequence AAUACAACAGCUAUUUUCGUGGGCCUCUUUGGCCGACGAAAAUACAGCAGCUAUUUUCGUGGGCCUUUUUGGCCGACGAAAAUACAGCAGCUAGUUUCGUGGGCCUCGUUGGCCGACGAAAAUAGCUGUUGUAUUUU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
EZ089743.1
ncRNA:24   CGG-GUGCUUUUAUCGACAACAUAA   1
  *||-||||**||||||||||||||*
targets:106   ACCACACGUCAAUAGCUGUUGUAUA   130

3.0 TSA: Zea mays contig25389, mRNA sequence NA coding protein psRNATarget