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BaseInfo

ncRNA ID	novel_zma_miR11494
Species	Zea mays
Class	miRNA
Genome position	Chr2:35353149-35353282 [+]
Reference genome	RefGen_v4
Source	SRR5100255
Length	24
Mature sequence(if miRNA)	111 - ACCGUAGGGUGUAAGAAGAGGGCU - 134
Stem-loop(if miRNA)	---        GA     G     -  UAGACAU    U    GCA     G      GACCAGAG   -  GC    UUUCUUCU  ACACU UAUGG GG       UGGA UUUU   CAUUA UUUUGA        GCA CU  C    ||||||||  ||||| ||||| ||       |||| ||||   ||||| ||||||        ||| ||  A    GGAGAAGA  UGUGG AUGCC CC       ACUU AGAG   GUAGU AGAACU        CGU GA  A UCG        -A     G     A  ------U    U    ---     G      --AUAGAA   C  AA
Stem-loop sequence	UUUCUUCUGAACACUGUAUGGGGUAGACAUUGGAUUUUUGCACAUUAGUUUUGAGACCAGAGGCACUGCCAAAAAGCUGCAAGAUAUCAAGAGUGAUGGAGAUUUCAUCCACCGUAGGGUGUAAGAAGAGGGCU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_020552785.1	ncRNA:24   UCGGGAGAAGAAUGUGGGAUGCCA   1   |||||||||||||||||||||||| targets:543   AGCCCUCUUCUUACACCCUACGGU   566 Target Full Sequence	0.0	PREDICTED: Zea mays uncharacterized LOC109946082 (LOC109946082), mRNA	NA	coding protein	psRNATarget
BT087434.1	ncRNA:24   UCGGGAGAAGAAUGUGGGAUGCCA   1   =||*||=||||||||||||*|||| targets:645   GGCACUUUUCUUACACCCUUCGGU   668 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0074B16 mRNA, complete cds	NA	coding protein	psRNATarget
XM_020542224.1	ncRNA:24   UCGGGAGAAGAAUGUGGGAUGCCA   1   =||*||=||||||||||||*|||| targets:1290   GGCACUUUUCUUACACCCUUCGGU   1313 Target Full Sequence	2.5	PREDICTED: Zea mays Dynein light chain type 1 family protein (LOC100382335), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_008646116.2	ncRNA:24   UCGGGAGAAGAAUGUGGGAUGCCA   1   =||*|||||||||||||||*|||* targets:5475   GGCACUCUUCUUACACCCUUCGGC   5498 Target Full Sequence	2.5	PREDICTED: Zea mays putative pentatricopeptide repeat-containing protein At1g56570 (LOC103625722), transcript variant X2, mRNA	NA	coding protein	psRNATarget