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BaseInfo

ncRNA ID	novel_zma_miR11490
Species	Zea mays
Class	miRNA
Genome position	Chr2:104835711-104835768 [-]
Reference genome	RefGen_v4
Source	SRR5100255
Length	24
Mature sequence(if miRNA)	35 - AGCACUCGGCAAAGAACCAAGACU - 58
Stem-loop(if miRNA)	--A                 AAG   U G    GCACUCGGCAAAGAACC   ACU G G    |||||||||||||||||   ||| |    UGUGAGCCGUUUCUUGG   UGG C C UAA                 AUA   C A
Stem-loop sequence	AGCACUCGGCAAAGAACCAAGACUUGGGCACCGGUAUAGGUUCUUUGCCGAGUGUAAU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
HI407027.1	ncRNA:24   UCAGAACCAAGAAACGGCUCACGA   1   =||||||||||||||||||||||| targets:47   GGUCUUGGUUCUUUGCCGAGUGCU   70 Target Full Sequence	0.0	Sequence 5152 from Patent EP2074227	NA	coding protein	psRNATarget
JB167488.1	ncRNA:24   UCAGAACCAAGAAACGGCUCACGA   1   =||||||||||||||||||||||| targets:47   GGUCUUGGUUCUUUGCCGAGUGCU   70 Target Full Sequence	0.0	Sequence 5152 from Patent EP2559767	NA	coding protein	psRNATarget
LQ239157.1	ncRNA:24   UCAGAACCAAGAAACGGCUCACGA   1   =||||||||||||||||||||||| targets:47   GGUCUUGGUUCUUUGCCGAGUGCU   70 Target Full Sequence	0.0	Sequence 5152 from Patent EP2985353	NA	coding protein	psRNATarget
EZ087925.1	ncRNA:24   UCAGAACC-AAGAAACGGCUCACGA   1   |||*||||-|||||||||||||||* targets:45   AGUGUUGGCUUCUUUGCCGAGUGCC   69 Target Full Sequence	3.0	TSA: Zea mays contig23571, mRNA sequence	NA	coding protein	psRNATarget
BT067215.1	ncRNA:24   UCAGAACC-AAGAAACGGCUCACGA   1   |||*||||-|||||||||||||||* targets:1144   AGUGUUGGCUUCUUUGCCGAGUGCC   1168 Target Full Sequence	3.0	Zea mays full-length cDNA clone ZM_BFb0310H18 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001175109.1	ncRNA:24   UCAGAACC-AAGAAACGGCUCACGA   1   |||*||||-|||||||||||||||* targets:1281   AGUGUUGGCUUCUUUGCCGAGUGCC   1305 Target Full Sequence	3.0	Zea mays 1-aminocyclopropane-1-carboxylate oxidase2 (cl955_1), mRNA	NA	coding protein	psRNATarget
BT064046.1	ncRNA:24   UCAGAACC-AAGAAACGGCUCACGA   1   |||*||||-|||||||||||||||* targets:1281   AGUGUUGGCUUCUUUGCCGAGUGCC   1305 Target Full Sequence	3.0	Zea mays full-length cDNA clone ZM_BFc0133L10 mRNA, complete cds	NA	coding protein	psRNATarget
HI406639.1	ncRNA:24   UCAGAACCAAGAAACGGCUCACGA   1   ||-|*||*|||||||||||||||* targets:162   AG-CGUGCUUCUUUGCCGAGUGCC   184 Target Full Sequence	2.0	Sequence 4764 from Patent EP2074227	NA	coding protein	psRNATarget
LQ238769.1	ncRNA:24   UCAGAACCAAGAAACGGCUCACGA   1   ||-|*||*|||||||||||||||* targets:162   AG-CGUGCUUCUUUGCCGAGUGCC   184 Target Full Sequence	2.0	Sequence 4764 from Patent EP2985353	NA	coding protein	psRNATarget
JB167100.1	ncRNA:24   UCAGAACCAAGAAACGGCUCACGA   1   ||-|*||*|||||||||||||||* targets:162   AG-CGUGCUUCUUUGCCGAGUGCC   184 Target Full Sequence	2.0	Sequence 4764 from Patent EP2559767	NA	coding protein	psRNATarget