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BaseInfo

ncRNA ID	novel_zma_miR11488
Species	Zea mays
Class	miRNA
Genome position	Chr2:106728488-106728619 [-]
Reference genome	RefGen_v4
Source	SRR5100255
Length	24
Mature sequence(if miRNA)	109 - UAAAAGAAAACACUCGGCGAAGAG - 132
Stem-loop(if miRNA)	---UAA                   A   U                                    A       AAGAAAACACUCGGCGAAG GUU CUUUGCUGAGUGUUGUAUUUUUGACACUCGGCAAAG G       ||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||       UUUUUUUGUGAGCCGUUUC CGA GAAACGGCUCACAACAUAAAAAUUGUGAGCCGUUUC C ACAACC                   A   -                                    U
Stem-loop sequence	UAAAAGAAAACACUCGGCGAAGAGUUUCUUUGCUGAGUGUUGUAUUUUUGACACUCGGCAAAGAGCUCUUUGCCGAGUGUUAAAAAUACAACACUCGGCAAAGAGCACUUUGCCGAGUGUUUUUUUCCAACA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
NM_001165647.1	ncRNA:24   GAGAAGCGGCUCACAAAAGAAAAU   1   =||||=|=|||||||||||||||| targets:87   UUCUUUGUCGAGUGUUUUCUUUUA   110 Target Full Sequence	2.0	Zea mays uncharacterized LOC100304195 (LOC100304195), mRNA	NA	coding protein	psRNATarget
BT055423.1	ncRNA:24   GAGAAGCGGCUCACAAAAGAAAAU   1   =||||=|=|||||||||||||||| targets:87   UUCUUUGUCGAGUGUUUUCUUUUA   110 Target Full Sequence	2.0	Zea mays full-length cDNA clone ZM_BFb0179M04 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001152461.1	ncRNA:24   GAGAAGCGGCUCACAAAAGAAAAU   1   =||||=|=|||||||||||||||| targets:2106   UUCUUUGUCGAGUGUUUUCUUUUA   2129 Target Full Sequence	2.0	Zea mays uncharacterized LOC100279456 (IDP836), mRNA	NA	coding protein	psRNATarget
BT054268.1	ncRNA:24   GAGAAGCGGCUCACAAAAGAAAAU   1   =||||=|=|||||||||||||||| targets:2106   UUCUUUGUCGAGUGUUUUCUUUUA   2129 Target Full Sequence	2.0	Zea mays full-length cDNA clone ZM_BFb0206G23 mRNA, complete cds	NA	coding protein	psRNATarget
EZ114087.1	ncRNA:24   GAGAAGCGGCUCACAAAAGAAAAU   1   *|||*||*|*|||||||||||||* targets:482   AUCUCCGGCUAGUGUUUUCUUUUC   505 Target Full Sequence	3.0	TSA: Zea mays contig49748, mRNA sequence	NA	coding protein	psRNATarget
EU951018.1	ncRNA:24   GAGAAGCGGCUCACAAAAGAAAAU   1   *|||*||*|*|||||||||||||* targets:658   AUCUCCGGCUAGUGUUUUCUUUUC   681 Target Full Sequence	3.0	Zea mays clone 679473 mRNA sequence	NA	coding protein	psRNATarget
XM_020549574.1	ncRNA:24   GAGAAGCGGCUCACAAAAGAAAAU   1   *|||*||*|*|||||||||||||* targets:1797   AUCUCCGGCUAGUGUUUUCUUUUC   1820 Target Full Sequence	3.0	PREDICTED: Zea mays Protein kinase family protein (pco066784), transcript variant X1, mRNA	NA	coding protein	psRNATarget