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BaseInfo

ncRNA ID	novel_zma_miR11480
Species	Zea mays
Class	miRNA
Genome position	Chr2:32614630-32614690 [+]
Reference genome	RefGen_v4
Source	SRR5100255
Length	23
Mature sequence(if miRNA)	39 - GAAUAAUGUGUAUGAACUCGCCU - 61
Stem-loop(if miRNA)	--     C   C       CA  G  -   C   GUGAG UCA AUACGUU  UC CU CAA A   ||||| ||| |||||||  || || |||   CGCUC AGU UGUGUAA  AG GG GUU A UC     A   A       UA  G  U   G
Stem-loop sequence	GUGAGCUCACAUACGUUCAUCGCUCAACAAGUUGUGGGGAAUAAUGUGUAUGAACUCGCCU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
U03678.1	ncRNA:23   UCCGCUCAAGUAUGUGUAAUAAG   1   *|||||||||||=|||||||||| targets:93   UGGCGAGUUCAUGCACAUUAUUC   115 Target Full Sequence	1.5	Zea mays W-22 clone cDNA4 retroelement PREM-1-containing mRNA	NA	coding protein	psRNATarget
BT017246.1	ncRNA:23   UCCGCUCAAGUAUGUGUAAUAAG   1   *|||||||||||=|||||||||| targets:806   UGGCGAGUUCAUGCACAUUAUUC   828 Target Full Sequence	1.5	Zea mays clone EL01N0306E03.c mRNA sequence	NA	coding protein	psRNATarget
EU966892.1	ncRNA:23   UCCGCUCAAGUAUGUGUAAUAAG   1   *|||||||||||=|||||||||| targets:1154   UGGCGAGUUCAUGCACAUUAUUC   1176 Target Full Sequence	1.5	Zea mays clone 297978 mRNA sequence	NA	coding protein	psRNATarget
BT062857.1	ncRNA:23   UCCGCUCAAGUAUGUGUAAUAAG   1   *|||||||||||=|||||||||| targets:1264   UGGCGAGUUCAUGCACAUUAUUC   1286 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFc0002H03 mRNA, complete cds	NA	coding protein	psRNATarget
BT063206.1	ncRNA:23   UCCGCUCAAGUAUGUGUAAUAAG   1   *|||||||||||=|||||||||| targets:1520   UGGCGAGUUCAUGCACAUUAUUC   1542 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFc0038I19 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001146784.1	ncRNA:23   UCCGCUCAAGUAUGUGUAAUAAG   1   *|||||||||||=|||||||||| targets:1520   UGGCGAGUUCAUGCACAUUAUUC   1542 Target Full Sequence	1.5	Zea mays uncharacterized LOC100272298 (LOC100272298), mRNA	NA	coding protein	psRNATarget
EU967036.1	ncRNA:23   UCCGCUCAAGUAUGUGUAAUAAG   1   *|||||||||||=|||||||||| targets:1204   UGGCGAGUUCAUGCACAUUAUUC   1226 Target Full Sequence	1.5	Zea mays clone 299030 hypothetical protein mRNA, complete cds	NA	coding protein	psRNATarget
EU956904.1	ncRNA:23   UCCGCUCAAGUAUGUGUAAUAAG   1   *|||||||||||=|||||||||| targets:2055   UGGCGAGUUCAUGCACAUUAUUC   2077 Target Full Sequence	1.5	Zea mays clone 1577041 mRNA sequence	NA	coding protein	psRNATarget
XM_008645673.2	ncRNA:23   UCCGCUCAAGUAUGUGUAAUAAG   1   *|||||||||||=|||||||||| targets:1284   UGGCGAGUUCAUGCACAUUAUUC   1306 Target Full Sequence	1.5	PREDICTED: Zea mays RING/U-box superfamily protein (LOC100304255), transcript variant X1, mRNA	NA	coding protein	psRNATarget
EU961747.1	ncRNA:23   UCCGCUCAAGUAUGUGUAAUAAG   1   *|||||||||||*|||||||||| targets:1142   UGGCGAGUUCAUUCACAUUAUUC   1164 Target Full Sequence	1.5	Zea mays clone 238028 mRNA sequence	NA	coding protein	psRNATarget
EU944499.1	ncRNA:23   UCCGCUCAAGUAUGUGUAAUAAG   1   *|||||||||*|||||||||||| targets:1178   UGGCGAGUUCCUACACAUUAUUC   1200 Target Full Sequence	1.5	Zea mays clone 220729 mRNA sequence	NA	coding protein	psRNATarget
HI406353.1	ncRNA:23   UCCGCUCAAGUAUGUGUAAUAAG   1   *||=|||*||||=|||||||||| targets:15   UGGUGAGCUCAUGCACAUUAUUC   37 Target Full Sequence	2.5	Sequence 4478 from Patent EP2074227	NA	coding protein	psRNATarget
LQ238483.1	ncRNA:23   UCCGCUCAAGUAUGUGUAAUAAG   1   *||=|||*||||=|||||||||| targets:15   UGGUGAGCUCAUGCACAUUAUUC   37 Target Full Sequence	2.5	Sequence 4478 from Patent EP2985353	NA	coding protein	psRNATarget
JB166814.1	ncRNA:23   UCCGCUCAAGUAUGUGUAAUAAG   1   *||=|||*||||=|||||||||| targets:15   UGGUGAGCUCAUGCACAUUAUUC   37 Target Full Sequence	2.5	Sequence 4478 from Patent EP2559767	NA	coding protein	psRNATarget
EU951350.1	ncRNA:23   UCCGCUCAAGUAUGUGUAAUAAG   1   *||=|||*||||=|||||||||| targets:415   UGGUGAGCUCAUGCACAUUAUUC   437 Target Full Sequence	2.5	Zea mays clone 697591 mRNA sequence	NA	coding protein	psRNATarget
EU942555.1	ncRNA:23   UCCGCUCAAGUAUGUGUAAUAAG   1   |*|=|=||||||*|||||||||| targets:251   ACGUGGGUUCAUCCACAUUAUUC   273 Target Full Sequence	2.5	Zea mays clone 1517947 mRNA sequence	NA	coding protein	psRNATarget