Search result

BaseInfo

ncRNA ID	novel_zma_miR11472
Species	Zea mays
Class	miRNA
Genome position	Chr2:145145405-145145499 [-]
Reference genome	RefGen_v4
Source	SRR5100255
Length	24
Mature sequence(if miRNA)	72 - AUAUCCCCGGGUCCACUAAAGAGU - 95
Stem-loop(if miRNA)	--AUA             U       AGAA     -CA GAAAGGCCCAA      UCCCCGGGUCCAC AAAGAGU    GACCU   C           G      ||||||||||||| |||||||    |||||   |      AGGGGUCCGGGUG UUUCUUA    CUGGA   C           G UAGAG             C       ----     AUA UAAAUAACCCU
Stem-loop sequence	AUAUCCCCGGGUCCACUAAAGAGUAGAAGACCUCACGAAAGGCCCAAGGUCCCAAUAAAUCAUAAGGUCAUUCUUUCGUGGGCCUGGGGAGAGAU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_020542440.1	ncRNA:24   UGA-GAAAUCACCUGGG-CCCCUAUA   1   |||-|||||||||||||-|||||||| targets:5129   ACUUCUUUAGUGGACCCAGGGGAUAU   5154 Target Full Sequence	3.0	PREDICTED: Zea mays uncharacterized LOC109941458 (LOC109941458), mRNA	NA	coding protein	psRNATarget
XM_008649279.2	ncRNA:24   UGAGAAAUCACCUGGGCCCCUAUA   1   *||-|||||||||||||||||||| targets:12   CCU-UUUAGUGGACCCGGGGAUAU   34 Target Full Sequence	0.0	PREDICTED: Zea mays putative leucine-rich repeat receptor-like protein kinase family protein (LOC100272700), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_008649280.2	ncRNA:24   UGAGAAAUCACCUGGGCCCCUAUA   1   *||-|||||||||||||||||||| targets:341   CCU-UUUAGUGGACCCGGGGAUAU   363 Target Full Sequence	0.0	PREDICTED: Zea mays putative leucine-rich repeat receptor-like protein kinase family protein (LOC100272700), transcript variant X2, mRNA	NA	coding protein	psRNATarget