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BaseInfo

ncRNA ID	novel_zma_miR11468
Species	Zea mays
Class	miRNA
Genome position	Chr2:186501178-186501344 [-]
Reference genome	RefGen_v4
Source	SRR5100255
Length	24
Mature sequence(if miRNA)	1 - UUUUCUUAAGGAACCGUCACUAGA - 24
Stem-loop(if miRNA)	--                                              C        C             C  C  C        UAGUGGCGGUUUCUUAAGAAAAUCGCCACUAGAAAUCGUAUUUCUA UGGCGGUU CUUAAGAAAACCG CA UA AAAUCC   |||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||| || || |||||A   AUCACUGCCAAGGAAUUCUUUUGGCGGUGAUCUUUAGCAUAAAGAU ACUGCCAA GAAUUCUUUUGGC GU AU UUUAGU AG                                              C        A             A  C  C
Stem-loop sequence	UAGUGGCGGUUUCUUAAGAAAAUCGCCACUAGAAAUCGUAUUUCUACUGGCGGUUCCUUAAGAAAACCGCCACUACAAAUCCAUGAUUUCUACUGACGGUUUUCUUAAGAAACCGUCACUAGAAAUACGAUUUCUAGUGGCGGUUUUCUUAAGGAACCGUCACUAGA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
JB163558.1	ncRNA:24   AGAUCACUGCCAAGGAAUUCUUUU   1   |||||||=|||||||||||||||| targets:13   UCUAGUGGCGGUUCCUUAAGAAAA   36 Target Full Sequence	1.0	Sequence 1222 from Patent EP2559767	NA	coding protein	psRNATarget
HI403097.1	ncRNA:24   AGAUCACUGCCAAGGAAUUCUUUU   1   |||||||=|||||||||||||||| targets:13   UCUAGUGGCGGUUCCUUAAGAAAA   36 Target Full Sequence	1.0	Sequence 1222 from Patent EP2074227	NA	coding protein	psRNATarget
LQ235227.1	ncRNA:24   AGAUCACUGCCAAGGAAUUCUUUU   1   |||||||=|||||||||||||||| targets:13   UCUAGUGGCGGUUCCUUAAGAAAA   36 Target Full Sequence	1.0	Sequence 1222 from Patent EP2985353	NA	coding protein	psRNATarget
EU944427.1	ncRNA:24   AGAUCACUGCCAAGGAAUUCUUUU   1   ||||*||=|||||=|||||||||| targets:507   UCUACUGGCGGUUUCUUAAGAAAA   530 Target Full Sequence	2.5	Zea mays clone 218366 mRNA sequence	NA	coding protein	psRNATarget
JB163445.1	ncRNA:24   AGAUCACUGCCAAGGAAUUCUUUU   1   ||||**|=|||||||||||||||| targets:39   UCUACAGGCGGUUCCUUAAGAAAA   62 Target Full Sequence	2.0	Sequence 1109 from Patent EP2559767	NA	coding protein	psRNATarget
HI402984.1	ncRNA:24   AGAUCACUGCCAAGGAAUUCUUUU   1   ||||**|=|||||||||||||||| targets:39   UCUACAGGCGGUUCCUUAAGAAAA   62 Target Full Sequence	2.0	Sequence 1109 from Patent EP2074227	NA	coding protein	psRNATarget
LQ235114.1	ncRNA:24   AGAUCACUGCCAAGGAAUUCUUUU   1   ||||**|=|||||||||||||||| targets:39   UCUACAGGCGGUUCCUUAAGAAAA   62 Target Full Sequence	2.0	Sequence 1109 from Patent EP2985353	NA	coding protein	psRNATarget
NM_001176701.1	ncRNA:24   AGA-UCACUGCCAAGGAAUUCUUUU   1   |=|-|*||=|||||||||||||||| targets:919   UUUCACUGGCGGUUCCUUAAGAAAA   943 Target Full Sequence	1.0	Zea mays uncharacterized LOC100384113 (LOC100384113), mRNA	NA	coding protein	psRNATarget
BT069194.2	ncRNA:24   AGA-UCACUGCCAAGGAAUUCUUUU   1   |=|-|*||=|||||||||||||||| targets:919   UUUCACUGGCGGUUCCUUAAGAAAA   943 Target Full Sequence	1.0	Zea mays full-length cDNA clone ZM_BFb0304H22 mRNA, complete cds	NA	coding protein	psRNATarget