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BaseInfo

ncRNA ID	novel_zma_miR11461
Species	Zea mays
Class	miRNA
Genome position	Chr2:205446713-205446838 [-]
Reference genome	RefGen_v4
Source	SRR5100255
Length	24
Mature sequence(if miRNA)	1 - AAUUAGAAUAACCGAAUAAAGCCU - 24
Stem-loop(if miRNA)	--    -     UUUCCC       -    -A   AUU    A        UC  -UUUAA    A   GCUU GUUCG      UUUUAAU CCAU  UGA   GAAU GUAUUGGG  GA      AUUU U   |||| |||||      ||||||| ||||  |||   |||| ||||||||  ||      |||| A   CGAA UAAGC      AAGAUUA GGUA  ACU   CUUA CAUAACCC  CU      UGAA G UC    A     --CAAU       A    CG   AAU    -        UA  UUACAC    C
Stem-loop sequence	GCUUGUUCGUUUCCCUUUUAAUCCAUAUGAAUUGAAUAGUAUUGGGUCGAUUUAAAUUUAUAGCAAGUCACAUUUCAUCCCAAUACAUUCUAAUCAGCAUGGAAUUAGAAUAACCGAAUAAAGCCU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
BT041309.1	ncRNA:24   UCCGAAAUAAGCCAAUAAGAUUAA   1   ||||*||=||||||||||*||||| targets:12   AGGCCUUGUUCGGUUAUUAUAAUU   35 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0380J08 mRNA, complete cds	NA	coding protein	psRNATarget
LQ238785.1	ncRNA:24   UCCGAAAUAAGCCAAUAAGAUUAA   1   ||||*||=||||||||||||*||| targets:64   AGGCCUUGUUCGGUUAUUCUCAUU   87 Target Full Sequence	2.5	Sequence 4780 from Patent EP2985353	NA	coding protein	psRNATarget
HI406655.1	ncRNA:24   UCCGAAAUAAGCCAAUAAGAUUAA   1   ||||*||=||||||||||||*||| targets:64   AGGCCUUGUUCGGUUAUUCUCAUU   87 Target Full Sequence	2.5	Sequence 4780 from Patent EP2074227	NA	coding protein	psRNATarget
JB167116.1	ncRNA:24   UCCGAAAUAAGCCAAUAAGAUUAA   1   ||||*||=||||||||||||*||| targets:64   AGGCCUUGUUCGGUUAUUCUCAUU   87 Target Full Sequence	2.5	Sequence 4780 from Patent EP2559767	NA	coding protein	psRNATarget
XM_020542631.1	ncRNA:24   UCCGAAAUAAGCCAAUAAGAUUAA   1   ||*|*||=||||||||||=||||| targets:6271   AGCCCUUGUUCGGUUAUUUUAAUU   6294 Target Full Sequence	2.5	PREDICTED: Zea mays protein Rf1, mitochondrial-like (LOC103635420), transcript variant X3, mRNA	NA	coding protein	psRNATarget
XM_020542629.1	ncRNA:24   UCCGAAAUAAGCCAAUAAGAUUAA   1   ||*|*||=||||||||||=||||| targets:5856   AGCCCUUGUUCGGUUAUUUUAAUU   5879 Target Full Sequence	2.5	PREDICTED: Zea mays protein Rf1, mitochondrial-like (LOC103635420), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_020542630.1	ncRNA:24   UCCGAAAUAAGCCAAUAAGAUUAA   1   ||*|*||=||||||||||=||||| targets:5794   AGCCCUUGUUCGGUUAUUUUAAUU   5817 Target Full Sequence	2.5	PREDICTED: Zea mays protein Rf1, mitochondrial-like (LOC103635420), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_008675761.2	ncRNA:24   UCCGAAAUAAGCCAAUAAGAUUAA   1   ||*|*||=||||||||||=||||| targets:1513   AGACCUUGUUCGGUUAUUUUAAUU   1536 Target Full Sequence	2.5	PREDICTED: Zea mays hypothetical protein (LOC103650103), transcript variant X2, mRNA	NA	coding protein	psRNATarget
JB167414.1	ncRNA:24   UCCGAAAUAAGCCAAUAAGAUUAA   1   ||*=*||=||||||||||=||||| targets:68   AGAUCUUGUUCGGUUAUUUUAAUU   91 Target Full Sequence	2.5	Sequence 5078 from Patent EP2559767	NA	coding protein	psRNATarget
HI406953.1	ncRNA:24   UCCGAAAUAAGCCAAUAAGAUUAA   1   ||*=*||=||||||||||=||||| targets:68   AGAUCUUGUUCGGUUAUUUUAAUU   91 Target Full Sequence	2.5	Sequence 5078 from Patent EP2074227	NA	coding protein	psRNATarget
LQ239083.1	ncRNA:24   UCCGAAAUAAGCCAAUAAGAUUAA   1   ||*=*||=||||||||||=||||| targets:68   AGAUCUUGUUCGGUUAUUUUAAUU   91 Target Full Sequence	2.5	Sequence 5078 from Patent EP2985353	NA	coding protein	psRNATarget
BT061983.1	ncRNA:24   UCCGAAAUAAGCCAAUAAGAUUAA   1   ****||||||=|*||||||||||| targets:2003   UUUAUUUAUUUGUUUAUUCUAAUU   2026 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0203F20 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001174495.1	ncRNA:24   UCCGAAAUAAGCCAAUAAGAUUAA   1   ****||||||=|*||||||||||| targets:2003   UUUAUUUAUUUGUUUAUUCUAAUU   2026 Target Full Sequence	2.5	Zea mays putative WRKY DNA-binding domain superfamily protein (LOC100381682), mRNA	NA	coding protein	psRNATarget