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BaseInfo

ncRNA ID novel_zma_miR11453
Species Zea mays
Class miRNA
Genome position Chr2:227593785-227593881 [-]
Reference genome RefGen_v4
Source SRR5100255
Length 23
Mature sequence(if miRNA) 75 - UGACUUAUUUUCGGCGGCUUCUG - 97
Stem-loop(if miRNA) UGAC       C       -U     -C   AAAAAAAACUG           C
    UUAUUUU GGCGGCU  CUGGC  GCC           GCCGAAAAUAA A
    ||||||| |||||||  |||||  |||           |||||||||||
    AAUAAAA CCGCCGG  GACCG  CGG           CGGCUUUUAUU G
CAAC       A       CU     AC   -----------           A
Stem-loop sequence UGACUUAUUUUCGGCGGCUUCUGGCCGCCAAAAAAAACUGGCCGAAAAUAACAGAUUAUUUUCGGCGGCCAGCCAGUCGGCCGCCAAAAAUAACAAC

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_020541803.1
ncRNA:23   GUC--UUCGGCGGCUUUUAUUCAGU   1
  |||--||||=|||||||||*|||||
targets:905   CAGUUAAGCUGCCGAAAAUCAGUCA   929

2.5 PREDICTED: Zea mays myb domain protein 4r1 (LOC103631936), transcript variant X2, mRNA NA coding protein psRNATarget
BT065567.1
ncRNA:23   GUCUUCGGCGGCUUUUAUUCAGU   1
  ||**||||||||||||||||*|*
targets:1029   CACCAGCCGCCGAAAAUAAGGCU   1051

2.5 Zea mays full-length cDNA clone ZM_BFb0298D06 mRNA, complete cds NA coding protein psRNATarget
BT065567.1
ncRNA:23   GUCUUCGGCGGCUUUUAUUCAGU   1
  ||**||||||||||||||||*|*
targets:1070   CACCAGCCGCCGAAAAUAAGGCU   1092

2.5 Zea mays full-length cDNA clone ZM_BFb0298D06 mRNA, complete cds NA coding protein psRNATarget