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BaseInfo

ncRNA ID	novel_zma_miR11449
Species	Zea mays
Class	miRNA
Genome position	Chr8:112024119-112024325 [-]
Reference genome	RefGen_v4
Source	SRR1997865
Length	22
Mature sequence(if miRNA)	1 - CAGAAGAAGCUACAUGGGACUC - 22
Stem-loop(if miRNA)	--          U  - AG    G   AU   UUCGUCU  -        ----    UACCG  A  A       AGAUA  ACCA     G    --ACCAAG      CU   GUUCCAUGUA CU C  CUGC GAA  GUG       AC CCACUGAA    GUGC     GA CC GACCUUG     GA    GAUUU UCCU        AGUACC  G   |||||||||| || |  |||| |||  |||       || ||||||||    ||||     || || |||||||     ||    ||||| ||||        ||||||  U   CAGGGUACAU GA G  GACG CUU  CAC       UG GGUGACUU    UAUG     CU GG CUGGAAC     CU    CUAGA AGGA        UUAUGG  C CU          C  A AA    A   AC   -------  A        GAAA    UAAGA  -  -       --GGG  -CAA     A    AAACUAGA      AA
Stem-loop sequence	GUUCCAUGUAUCUCAGCUGCGGAAAUGUGUUCGUCUACCCACUGAAGUGCUACCGGAACCAGACCUUGAGAUAGAACCAGAUUUGUCCUACCAAGAGUACCCUGUCAAGGUAUUAGAUCAAAAGGAAAGAUCAACUCGGGCAAGGUCGGUCAGAAUGUAUAAAGUUCAGUGGAGUCACCAUUCAGCAGAAGAAGCUACAUGGGACUC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
EU952144.1	ncRNA:22   CUCAG--GGUACAUCGAAGAAGAC   1   *||||--||||||||||||||||| targets:663   CAGUCUCCCAUGUAGCUUCUUCUG   686 Target Full Sequence	2.5	Zea mays clone 1212406 mRNA sequence	NA	coding protein	psRNATarget
EU952137.1	ncRNA:22   CUCAGGGUACAUCGAAGAAGAC   1   |**||||||||||||||||||| targets:1971   GUCUCCCAUGUAGCUUCUUCUG   1992 Target Full Sequence	0.0	Zea mays clone 1168415 hypothetical protein mRNA, complete cds	NA	coding protein	psRNATarget
EU971972.1	ncRNA:22   CUCAGGGUACAUCGAAGAAGAC   1   ||*|||*||||*|||||||||| targets:540   GACUCCAAUGUUGCUUCUUCUG   561 Target Full Sequence	2.5	Zea mays clone 372997 mRNA sequence	NA	coding protein	psRNATarget
XM_020546651.1	ncRNA:22   CUCAGGGUACAUCGAAGAAGAC   1   ||*|||*||||*|||||||||| targets:608   GACUCCAAUGUUGCUUCUUCUG   629 Target Full Sequence	2.5	PREDICTED: Zea mays sodium channel modifier 1 (LOC103643156), transcript variant X3, mRNA	NA	coding protein	psRNATarget
XM_008666307.2	ncRNA:22   CUCAGGGUACAUCGAAGAAGAC   1   ||*|||*||||*|||||||||| targets:608   GACUCCAAUGUUGCUUCUUCUG   629 Target Full Sequence	2.5	PREDICTED: Zea mays sodium channel modifier 1 (LOC103643156), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_008666308.2	ncRNA:22   CUCAGGGUACAUCGAAGAAGAC   1   ||*|||*||||*|||||||||| targets:608   GACUCCAAUGUUGCUUCUUCUG   629 Target Full Sequence	2.5	PREDICTED: Zea mays sodium channel modifier 1 (LOC103643156), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_008666310.2	ncRNA:22   CUCAGGGUACAUCGAAGAAGAC   1   ||*|||*||||*|||||||||| targets:632   GACUCCAAUGUUGCUUCUUCUG   653 Target Full Sequence	2.5	PREDICTED: Zea mays sodium channel modifier 1 (LOC103643156), transcript variant X5, mRNA	NA	coding protein	psRNATarget