Search result

BaseInfo

ncRNA ID	novel_zma_miR11444
Species	Zea mays
Class	miRNA
Genome position	Chr2:228314130-228314216 [+]
Reference genome	RefGen_v4
Source	SRR5100255
Length	24
Mature sequence(if miRNA)	1 - AUUUUCACUGUCGGUUUUCUUAAG - 24
Stem-loop(if miRNA)	--          UC   UU      -   A  U       C       AUUUUCACUG  GGU  UCUUAA GCA CC GCCAGUG AAAUG   ||||||||||  |||  |||||| ||| || ||||||| ||||U   UAAAAGUGAC  CCA  AGAAUU UGU GG CGGUCAC UUUAU UG          CA   --      A   C  -       C
Stem-loop sequence	AUUUUCACUGUCGGUUUUCUUAAGCAACCUGCCAGUGCAAAUGUUAUUUCCACUGGCGGCUGUAUUAAGAACCACCAGUGAAAAUGU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
NM_001176701.1	ncRNA:24   GAAUUCUUUUGGCUGUCACUUUUA   1   |||||||||||||*|||||||||| targets:934   CUUAAGAAAACCGCCAGUGAAAAU   957 Target Full Sequence	1.5	Zea mays uncharacterized LOC100384113 (LOC100384113), mRNA	NA	coding protein	psRNATarget
BT069194.2	ncRNA:24   GAAUUCUUUUGGCUGUCACUUUUA   1   |||||||||||||*|||||||||| targets:934   CUUAAGAAAACCGCCAGUGAAAAU   957 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFb0304H22 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001150001.1	ncRNA:24   GAAUUCUUUUGGCUGUCACUUUUA   1   |*|||*|||||||*|||||||||| targets:656   CGUAAUAAAACCGCCAGUGAAAAU   679 Target Full Sequence	2.5	Zea mays uncharacterized LOC100276144 (LOC100276144), mRNA	NA	coding protein	psRNATarget
EU960305.1	ncRNA:24   GAAUUCUUUUGGCUGUCACUUUUA   1   |*|||*|||||||*|||||||||| targets:656   CGUAAUAAAACCGCCAGUGAAAAU   679 Target Full Sequence	2.5	Zea mays clone 223391 hypothetical protein mRNA, complete cds	NA	coding protein	psRNATarget
EU944461.1	ncRNA:24   GAAUUCUUUUGGCUGUCACUUUUA   1   |*|||*|||||||*|||||||||| targets:897   CGUAAUAAAACCGCCAGUGAAAAU   920 Target Full Sequence	2.5	Zea mays clone 219441 mRNA sequence	NA	coding protein	psRNATarget