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BaseInfo

ncRNA ID	novel_zma_miR11428
Species	Zea mays
Class	miRNA
Genome position	Chr2:176010489-176010549 [+]
Reference genome	RefGen_v4
Source	SRR5100255
Length	24
Mature sequence(if miRNA)	38 - AUUAGCUAGAGACAUUCAAACACU - 61
Stem-loop(if miRNA)	--          - A    AA     AG       UGUUUGAAUG C CUAG  CUAAU  UUAGU   |||||||||| | ||||  |||||  ||||U   ACAAACUUAC G GAUC  GAUUA  AAUCA UC          A A    --     -A
Stem-loop sequence	UGUUUGAAUGCACUAGAACUAAUAGUUAGUUACUAAAAUUAGCUAGAGACAUUCAAACACU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_008674068.2	ncRNA:24   UCA--CAAACUUACAGAGAUCGAUUA   1   |||--|||||=||||||=|||||||| targets:1610   AGUAUGUUUGGAUGUCUUUAGCUAAU   1635 Target Full Sequence	2.5	PREDICTED: Zea mays hypothetical protein (LOC100217088), transcript variant X1, mRNA	NA	coding protein	psRNATarget
BT060604.1	ncRNA:24   UCA--CAAACUUACAGAGAUCGAUUA   1   |||--|||||=||||||=|||||||| targets:1478   AGUAUGUUUGGAUGUCUUUAGCUAAU   1503 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0022G03 mRNA, complete cds	NA	coding protein	psRNATarget
XM_008674069.2	ncRNA:24   UCA--CAAACUUACAGAGAUCGAUUA   1   |||--|||||=||||||=|||||||| targets:1232   AGUAUGUUUGGAUGUCUUUAGCUAAU   1257 Target Full Sequence	2.5	PREDICTED: Zea mays hypothetical protein (LOC100217088), transcript variant X2, mRNA	NA	coding protein	psRNATarget
BT037911.1	ncRNA:24   UCA--CAAACUUACAGAGAUCGAUUA   1   |||--|||||=||||||=|||||||| targets:1250   AGUAUGUUUGGAUGUCUUUAGCUAAU   1275 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0202I17 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001143457.1	ncRNA:24   UCA--CAAACUUACAGAGAUCGAUUA   1   |||--|||||=||||||=|||||||| targets:1250   AGUAUGUUUGGAUGUCUUUAGCUAAU   1275 Target Full Sequence	2.5	Zea mays hypothetical protein (LOC100217088), mRNA	NA	coding protein	psRNATarget
BT083782.1	ncRNA:24   UCA--CAAACUUACAGAGAUCGAUUA   1   |||--|||||=||||||=|||||||| targets:1195   AGUAUGUUUGGAUGUCUUUAGCUAAU   1220 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0039K15 mRNA, complete cds	NA	coding protein	psRNATarget
JB167676.1	ncRNA:24   UCA--CAAACUUACAGAGAUCGAUUA   1   |||--|||||=||||||=|||||||| targets:117   AGUAUGUUUGGAUGUCUUUAGCUAAU   142 Target Full Sequence	2.5	Sequence 5340 from Patent EP2559767	NA	coding protein	psRNATarget
HI407215.1	ncRNA:24   UCA--CAAACUUACAGAGAUCGAUUA   1   |||--|||||=||||||=|||||||| targets:117   AGUAUGUUUGGAUGUCUUUAGCUAAU   142 Target Full Sequence	2.5	Sequence 5340 from Patent EP2074227	NA	coding protein	psRNATarget
LQ239345.1	ncRNA:24   UCA--CAAACUUACAGAGAUCGAUUA   1   |||--|||||=||||||=|||||||| targets:117   AGUAUGUUUGGAUGUCUUUAGCUAAU   142 Target Full Sequence	2.5	Sequence 5340 from Patent EP2985353	NA	coding protein	psRNATarget
XM_020545045.1	ncRNA:24   UCACAAACUUACAGAGAUCGAUUA   1   =|||||||=|||||||||*||||| targets:1239   GGUGUUUGGAUGUCUCUAACUAAU   1262 Target Full Sequence	2.5	PREDICTED: Zea mays CAB2 (LOC100281582), transcript variant X2, mRNA	NA	coding protein	psRNATarget
BT067062.1	ncRNA:24   UC--ACAAACUUACAGAGAUCGAUUA   1   ||--||||||=||||||*|||||||| targets:913   AGGAUGUUUGGAUGUCUAUAGCUAAU   938 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0174I15 mRNA, complete cds	NA	coding protein	psRNATarget