Search result

BaseInfo

ncRNA ID	novel_zma_miR11416
Species	Zea mays
Class	miRNA
Genome position	Chr2:91745160-91745309 [+]
Reference genome	RefGen_v4
Source	SRR5100255
Length	24
Mature sequence(if miRNA)	127 - GUAGAUUGCACUGUUUAUAGAAUG - 150
Stem-loop(if miRNA)	--C          AUA         U  C  AAC         -                         AAC    G    UCUAUAAACA   CAAUCUAUA UG AA   GGUGCAAAA GGUGUUUUUGGUGACCAUAUGGGUG   UAAU U    ||||||||||   ||||||||| || ||   ||||||||| |||||||||||||||||||||||||   ||||    AGAUAUUUGU   GUUAGAUGU AC UU   CUACGUUUU CCAUAAAAAUCACUGGUAUAUCCAC   GUUA A GUA          CAC         U  A  GUA         G                         ---    C
Stem-loop sequence	CUCUAUAAACAAUACAAUCUAUAUUGCAAAACGGUGCAAAAGGUGUUUUUGGUGACCAUAUGGGUGAACUAAUGUACAUUGCACCUAUAUGGUCACUAAAAAUACCGUUUUGCAUCAUGUUACAUUGUAGAUUGCACUGUUUAUAGAAUG

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
EU973003.1	ncRNA:24   GUA--AGAUAUUUGUCACGUUAGAUG   1   =||--||||||||||||||||||||| targets:1074   UAUACUCUAUAAACAGUGCAAUCUAC   1099 Target Full Sequence	0.0	Zea mays clone 391534 DNA-3-methyladenine glycosylase 1 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001158478.1	ncRNA:24   GUA--AGAUAUUUGUCACGUUAGAUG   1   =||--||||||||||||||||||||| targets:1074   UAUACUCUAUAAACAGUGCAAUCUAC   1099 Target Full Sequence	0.0	Zea mays DNA-3-methyladenine glycosylase 1 (LOC100285587), mRNA	NA	coding protein	psRNATarget
NM_001154344.1	ncRNA:24   GUAAGAUAUUUGUCACGUUAGAUG   1   ||*|||=||||||||||||||||| targets:463   CACUCUGUAAACAGUGCAAUCUAC   486 Target Full Sequence	1.0	Zea mays WRKY22 - superfamily of TFs having WRKY and zinc finger domains (LOC100281426), mRNA	NA	coding protein	psRNATarget
EU956670.1	ncRNA:24   GUAAGAUAUUUGUCACGUUAGAUG   1   ||*|||=||||||||||||||||| targets:463   CACUCUGUAAACAGUGCAAUCUAC   486 Target Full Sequence	1.0	Zea mays clone 1570252 WRKY22 - superfamily of TFs having WRKY and zinc finger domains mRNA, complete cds	NA	coding protein	psRNATarget
EU947328.1	ncRNA:24   GUAAGAUAUUUGUCACGUUAGAUG   1   ||*|||||||||||||||=||||| targets:120   CACUCUAUAAACAGUGCAGUCUAC   143 Target Full Sequence	1.5	Zea mays clone 339227 mRNA sequence	NA	coding protein	psRNATarget
BT067977.1	ncRNA:24   GUAAGAUAUUUGUCACGUUAGAUG   1   ||*|||=|||||||||||||||=| targets:1156   CACUCUGUAAACAGUGCAAUCUGC   1179 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0013K06 mRNA, complete cds	NA	coding protein	psRNATarget
XM_020550050.1	ncRNA:24   GUAAGAUAUUUGUCACGUUAGAUG   1   ||*|||=*|||||||||||||||| targets:1062   CACUCUGCAAACAGUGCAAUCUAC   1085 Target Full Sequence	2.0	PREDICTED: Zea mays uncharacterized LOC541932 (umc1540), transcript variant X1, mRNA	NA	coding protein	psRNATarget
EZ058715.1	ncRNA:24   GUAAGAUAUUUGUCACGUUAGAUG   1   ||*|=||||||||*|||||||||| targets:29   CAAUUUAUAAACAAUGCAAUCUAC   52 Target Full Sequence	1.5	TSA: Zea mays contig59837, mRNA sequence	NA	coding protein	psRNATarget
EZ058715.1	ncRNA:24   GUAAGAUAUUUGUCACGUUAGAUG   1   ||*|=||||||||*|||||||||= targets:2   CAAUUUAUAAACAAUGCAAUCUAU   25 Target Full Sequence	2.5	TSA: Zea mays contig59837, mRNA sequence	NA	coding protein	psRNATarget
BT016910.1	ncRNA:24   GUAAGAUAUUUGUCACGUUAGAUG   1   ||*|=||||||||*|||||||||| targets:81   CAAUUUAUAAACAAUGCAAUCUAC   104 Target Full Sequence	1.5	Zea mays clone Contig743 mRNA sequence	NA	coding protein	psRNATarget
BT016910.1	ncRNA:24   GUAAGAUAUUUGUCACGUUAGAUG   1   ||*|=||||||||||*|||||||| targets:123   CAAUUUAUAAACAGUACAAUCUAC   146 Target Full Sequence	1.5	Zea mays clone Contig743 mRNA sequence	NA	coding protein	psRNATarget
AY108352.1	ncRNA:24   GUA--AGAUAUUUGUCACGUUAGAUG   1   =||--|=||*||||||||||||*||| targets:1486   UAUACUUUAGAAACAGUGCAAUGUAC   1511 Target Full Sequence	2.5	Zea mays PCO148182 mRNA sequence	NA	coding protein	psRNATarget