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BaseInfo

ncRNA ID	novel_zma_miR11407
Species	Zea mays
Class	miRNA
Genome position	Chr1:5660033-5660201 [-]
Reference genome	RefGen_v4
Source	SRR5100255
Length	24
Mature sequence(if miRNA)	1 - AAUUAAUCCCUGGAAACCAAACAC - 24
Stem-loop(if miRNA)	--             AAAC     UUUAA   A            A   A    UCA                              GUUUGGUUUCUAG    UAAUU     UCU UUUAUUUUAUUC AUU UAGU   UAAAUUGCUAAAUACGGAAACUAAAAUA   |||||||||||||    |||||     ||| |||||||||||| ||| ||||   |||||||||||||||||||||||||||G   CAAACCAAAGGUC    AUUAA     AGG AAGUAAAAUAAG UAA AUCA   AUUUAACGAUUUAUGCUUUUGAUUUUGA CA             CCUA     CACUC   G            A   A    UUG
Stem-loop sequence	GUUUGGUUUCUAGAAACUAAUUUUUAAUCUAUUUAUUUUAUUCAAUUAUAGUUCAUAAAUUGCUAAAUACGGAAACUAAAAUAGAGUUUUAGUUUUCGUAUUUAGCAAUUUAGUUACUAAAAUAGAAUAAAAUGAAGGGACUCACAAUUAAUCCCUGGAAACCAAACAC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
EZ094508.1	ncRNA:24   CACAAACCAAAGGUCCCUAAUUAA   1   *||||||*|||||||||||||||* targets:216   AUGUUUGAUUUCCAGGGAUUAAUC   239 Target Full Sequence	2.0	TSA: Zea mays contig30160, mRNA sequence	NA	coding protein	psRNATarget
BT086326.1	ncRNA:24   CACAAACCAAAGGUCCCUAAUUAA   1   *||||||*|||||||||||||||* targets:1224   AUGUUUGAUUUCCAGGGAUUAAUC   1247 Target Full Sequence	2.0	Zea mays full-length cDNA clone ZM_BFc0152N01 mRNA, complete cds	NA	coding protein	psRNATarget
BT035624.1	ncRNA:24   CACAAACCAAAGGUCCCUAAUUAA   1   *||||||*|||||||||||||||* targets:1357   AUGUUUGAUUUCCAGGGAUUAAUC   1380 Target Full Sequence	2.0	Zea mays full-length cDNA clone ZM_BFb0072N01 mRNA, complete cds	NA	coding protein	psRNATarget
XM_008668947.2	ncRNA:24   CACAAACCAAAGGUCCCUAAUUAA   1   *||||||*|||||||||||||||* targets:1301   AUGUUUGAUUUCCAGGGAUUAAUC   1324 Target Full Sequence	2.0	PREDICTED: Zea mays Purine permease 3 (umc2598), transcript variant X1, mRNA	NA	coding protein	psRNATarget
NM_001138506.1	ncRNA:24   CACAAACCAAAGGUCCCUAAUUAA   1   *||||||*|||||||||||||||* targets:1346   AUGUUUGAUUUCCAGGGAUUAAUC   1369 Target Full Sequence	2.0	Zea mays Purine permease 3 (umc2598), mRNA	NA	coding protein	psRNATarget
EU969324.1	ncRNA:24   CACAAACCAAAGGUCCCUAAUUAA   1   *||||||*|||||||||||||||* targets:1346   AUGUUUGAUUUCCAGGGAUUAAUC   1369 Target Full Sequence	2.0	Zea mays clone 328544 ATPUP3 mRNA, complete cds	NA	coding protein	psRNATarget