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BaseInfo

ncRNA ID	novel_zma_miR11404
Species	Zea mays
Class	miRNA
Genome position	Chr1:23321858-23322008 [-]
Reference genome	RefGen_v4
Source	SRR5100255
Length	24
Mature sequence(if miRNA)	1 - CACACCACCAGAACUAAGGGCACC - 24
Stem-loop(if miRNA)	--                           C                              A         -  U U   UGCCCUUGGUUUUGGUGGUGUGCUCAC UAUACCCUUAGUCGUGUUUUUUGCUCAGUU UGCCCUUCU GU C A   ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||| || |   ACGGGAAUCAAGACCACCACACGAGUG AUAUGGGAAUCAGCACAAAAAACGAGUCGA ACGGGAAGG CA G U CC                           U                              C         U  C A
Stem-loop sequence	UGCCCUUGGUUUUGGUGGUGUGCUCACCUAUACCCUUAGUCGUGUUUUUUGCUCAGUUAUGCCCUUCUGUUCUAUAGCACUGGAAGGGCACAGCUGAGCAAAAAACACGACUAAGGGUAUAUGUGAGCACACCACCAGAACUAAGGGCACC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
BT036033.2	ncRNA:24   CCACGGGAAUCAAGACCACCACAC   1   |*|||||||||||=|||||||||| targets:849   GAUGCCCUUAGUUUUGGUGGUGUG   872 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFb0092L19 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001138790.2	ncRNA:24   CCACGGGAAUCAAGACCACCACAC   1   |*|||||||||||=|||||||||| targets:849   GAUGCCCUUAGUUUUGGUGGUGUG   872 Target Full Sequence	1.5	Zea mays uncharacterized LOC100193698 (LOC100193698), mRNA	NA	coding protein	psRNATarget
EZ076008.1	ncRNA:24   CCACGGGAAUCAAGACCACCACAC   1   |*||=|=||||||=|||||||||| targets:16   GAUGUCUUUAGUUUUGGUGGUGUG   39 Target Full Sequence	2.5	TSA: Zea mays contig11645, mRNA sequence	NA	coding protein	psRNATarget
EU973431.1	ncRNA:24   CCACGGGAAUCAAGACCACCACAC   1   **||**|||=|||||||||||||* targets:1687   UCUGAGCUUGGUUCUGGUGGUGUU   1710 Target Full Sequence	3.0	Zea mays clone 398661 mRNA sequence	NA	coding protein	psRNATarget
XM_020550301.1	ncRNA:24   CCACGGGAAUCAAGACCACCACAC   1   **||**|||=|||||||||||||* targets:1772   UCUGAGCUUGGUUCUGGUGGUGUU   1795 Target Full Sequence	3.0	PREDICTED: Zea mays transcription initiation factor TFIID subunit 8-like (LOC109944834), transcript variant X1, mRNA	NA	coding protein	psRNATarget