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BaseInfo

ncRNA ID	novel_zma_miR11397
Species	Zea mays
Class	miRNA
Genome position	Chr10:124496012-124496090 [-]
Reference genome	RefGen_v4
Source	SRR5100255
Length	24
Mature sequence(if miRNA)	1 - GACUAAAAUAGGGACUAAACUGUU - 24
Stem-loop(if miRNA)	--A  A     U  U                UA    CU A    AG UUAGU CC CUAUUUUAGUCUCAUU  GUUU  U A    || ||||| || ||||||||||||||||  ||||  | A    UC AAUCA GG GAUAAAAUCAGAGUAG  CAAA  G U UUG  A     -  -                --    UU U
Stem-loop sequence	AAGAUUAGUUCCUCUAUUUUAGUCUCAUUUAGUUUCUUAAAUUGUUAAACGAUGAGACUAAAAUAGGGACUAAACUGUU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_008653115.2	ncRNA:24   UUGUCAAAUCAGGGAUAAAAUCAG   1   |=||||||||||=||||||||||| targets:1607   AGCAGUUUAGUCUCUAUUUUAGUC   1630 Target Full Sequence	1.5	PREDICTED: Zea mays Pyruvate phosphate dikinase regulatory protein 2 (LOC100279565), transcript variant X1, mRNA	NA	coding protein	psRNATarget
EU970223.1	ncRNA:24   UUGUCAAAUCAGGGAUAAAAUCAG   1   |=||||||||||=||||||||||| targets:1599   AGCAGUUUAGUCUCUAUUUUAGUC   1622 Target Full Sequence	1.5	Zea mays clone 342396 mRNA sequence	NA	coding protein	psRNATarget
BT054466.1	ncRNA:24   UUGUCAAAUCAGGGAUAAAAUCAG   1   |=||||||||||=||||||||||| targets:1541   AGCAGUUUAGUCUCUAUUUUAGUC   1564 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFc0075A22 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001152562.1	ncRNA:24   UUGUCAAAUCAGGGAUAAAAUCAG   1   |=||||||||||=||||||||||| targets:1541   AGCAGUUUAGUCUCUAUUUUAGUC   1564 Target Full Sequence	1.5	Zea mays Pyruvate phosphate dikinase regulatory protein 2 (LOC100279565), mRNA	NA	coding protein	psRNATarget
BT083801.1	ncRNA:24   UUGUCAAAUCAGGGAUAAAAUCAG   1   |=||||||||||=||||||||||| targets:832   AGCAGUUUAGUCUCUAUUUUAGUC   855 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFb0041G14 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001301580.1	ncRNA:24   UU-GUCAAAUCAGGGAUAAAAUCAG   1   ||-||*||||||||*|||||||||| targets:2340   AAUCAUUUUAGUCCAUAUUUUAGUC   2364 Target Full Sequence	1.5	Zea mays heterogeneous nuclear ribonucleoprotein U-like protein 1 (LOC103645879), mRNA	NA	coding protein	psRNATarget
EU974954.1	ncRNA:24   UU-GUCAAAUCAGGGAUAAAAUCAG   1   ||-||*||||||||*|||||||||| targets:2340   AAUCAUUUUAGUCCAUAUUUUAGUC   2364 Target Full Sequence	1.5	Zea mays clone 461651 heterogeneous nuclear ribonucleoprotein U-like protein 1 mRNA, complete cds	NA	coding protein	psRNATarget