Search result

BaseInfo

ncRNA ID	novel_zma_miR11396
Species	Zea mays
Class	miRNA
Genome position	Chr1:53635566-53635664 [-]
Reference genome	RefGen_v4
Source	SRR5100255
Length	24
Mature sequence(if miRNA)	1 - ACCGGACAGGCACUGUAGAUUGUC - 24
Stem-loop(if miRNA)	----CA     C   ACA             - -  C  C       U   UCU       CUGCA UGU   CUGUCCGGUGCAC C GG CG GUGCGCG GGA   C       ||||| |||   ||||||||||||| | || || ||||||| |||       GAUGU ACG   GACAGGCCACGUG G CC GU CGCGUGU CCU   C CUGUUA     C   ---             U A  U  -       -   UUU
Stem-loop sequence	CACUGCACUGUACACUGUCCGGUGCACCGGCCGCGUGCGCGUGGAUCUCCUUUUCCUGUGCGCUGUCCAGUGUGCACCGGACAGGCACUGUAGAUUGUC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
HI409994.1	ncRNA:24   CUGUUAGAUGUCACGGACAGGCCA   1   ||||**||||||||*||||||||| targets:89   GACAUGCUACAGUGGCUGUCCGGU   112 Target Full Sequence	2.5	Sequence 8119 from Patent EP2074227	NA	coding protein	psRNATarget
JB170455.1	ncRNA:24   CUGUUAGAUGUCACGGACAGGCCA   1   ||||**||||||||*||||||||| targets:89   GACAUGCUACAGUGGCUGUCCGGU   112 Target Full Sequence	2.5	Sequence 8119 from Patent EP2559767	NA	coding protein	psRNATarget
LQ242124.1	ncRNA:24   CUGUUAGAUGUCACGGACAGGCCA   1   ||||**||||||||*||||||||| targets:89   GACAUGCUACAGUGGCUGUCCGGU   112 Target Full Sequence	2.5	Sequence 8119 from Patent EP2985353	NA	coding protein	psRNATarget
XM_008650945.1	ncRNA:24   CUGUUAGAUGUCACGGACAGGCCA   1   |||||***|||||||||||||||| targets:1068   GACAAGGAACAGUGCCUGUCCGGU   1091 Target Full Sequence	3.0	PREDICTED: Zea mays uncharacterized LOC103629851 (LOC103629851), mRNA	NA	coding protein	psRNATarget
EU952069.1	ncRNA:24   CUGUUAGAUGUCACGGACAGGCCA   1   |||||***|||||||||||||||| targets:1076   GACAAGGAACAGUGCCUGUCCGGU   1099 Target Full Sequence	3.0	Zea mays clone 1155789 hypothetical protein mRNA, complete cds	NA	coding protein	psRNATarget