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BaseInfo

ncRNA ID	novel_zma_miR11391
Species	Zea mays
Class	miRNA
Genome position	Chr1:72909653-72909780 [-]
Reference genome	RefGen_v4
Source	SRR5100255
Length	24
Mature sequence(if miRNA)	105 - GACAUGUUUGGUUUGUGGCUAACU - 128
Stem-loop(if miRNA)	--GACA            -      ----   -----          ---              CA   G       UGUUUGGUUUGU GGCUAA    CUA     UGCCAUACUU   UGCCUAAGGUUAGU  UUU A       |||||||||||| ||||||    |||     ||||||||||   ||||||||||||||  ||| A       ACAAACCAAGCA CUGAUU    GGU     ACGGUGUGAA   ACGGAUUCCAAUCA  AAG U UUCCGA            A      AAAC   GUAAA          AAC              AG   U
Stem-loop sequence	GACAUGUUUGGUUUGUGGCUAACUAUGCCAUACUUUGCCUAAGGUUAGUCAUUUGAAUUGAAGAACUAACCUUAGGCACAAAAGUGUGGCAAAAUGUGGCAAAUUAGUCAACGAACCAAACAAGCCUU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
HI403286.1	ncRNA:24   UCAAUCGGUGUUUGGUUUGUACAG   1   ||||||||||=||||||||||||| targets:105   AGUUAGCCACGAACCAAACAUGUC   128 Target Full Sequence	1.0	Sequence 1411 from Patent EP2074227	NA	coding protein	psRNATarget
LQ235416.1	ncRNA:24   UCAAUCGGUGUUUGGUUUGUACAG   1   ||||||||||=||||||||||||| targets:105   AGUUAGCCACGAACCAAACAUGUC   128 Target Full Sequence	1.0	Sequence 1411 from Patent EP2985353	NA	coding protein	psRNATarget
JB163747.1	ncRNA:24   UCAAUCGGUGUUUGGUUUGUACAG   1   ||||||||||=||||||||||||| targets:105   AGUUAGCCACGAACCAAACAUGUC   128 Target Full Sequence	1.0	Sequence 1411 from Patent EP2559767	NA	coding protein	psRNATarget
EU974994.1	ncRNA:24   UCAAUCGGUGUUUGGUUUGUACAG   1   ||||||||||=|||||||||*||| targets:831   AGUUAGCCACGAACCAAACAGGUC   854 Target Full Sequence	2.5	Zea mays clone 462458 pleckstrin homology domain-containing protein 1 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001158867.1	ncRNA:24   UCAAUCGGUGUUUGGUUUGUACAG   1   ||||||||||=|||||||||*||| targets:831   AGUUAGCCACGAACCAAACAGGUC   854 Target Full Sequence	2.5	Zea mays pleckstrin homology domain-containing protein 1 (LOC100285978), mRNA	NA	coding protein	psRNATarget
BT088093.1	ncRNA:24   UCAAUCGGUGUUUGGUUUGUACAG   1   ||||||||||=|||||||||*||| targets:812   AGUUAGCCACGAACCAAACAGGUC   835 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFc0012J15 mRNA, complete cds	NA	coding protein	psRNATarget
XM_008654136.2	ncRNA:24   UCAAUCGGUGUUUGGUUUGUACAG   1   |*||||||||||||||||||||*| targets:1408   AUUUAGCCACAAACCAAACAUGCC   1431 Target Full Sequence	1.5	PREDICTED: Zea mays clathrin light chain 3 (LOC103632305), mRNA	NA	coding protein	psRNATarget
XM_020543351.1	ncRNA:24   UCAAUCGGUGUUUGGUUUGUACAG   1   |*||||||||||||||||||||*| targets:885   AUUUAGCCACAAACCAAACAUGCC   908 Target Full Sequence	1.5	PREDICTED: Zea mays uncharacterized LOC109941998 (LOC109941998), transcript variant X4, mRNA	NA	coding protein	psRNATarget
EZ086875.1	ncRNA:24   UCAAUCGGU-GUUUGGUUUGUACAG   1   |*||||=||-||||||||||||||| targets:9   AUUUAGUCAUCAAACCAAACAUGUC   33 Target Full Sequence	3.0	TSA: Zea mays contig22521, mRNA sequence	NA	coding protein	psRNATarget
EZ107480.1	ncRNA:24   UCAAUCGGU-GUUUGGUUUGUACAG   1   |*||||=||-||||||||||||||| targets:38   AUUUAGUCAUCAAACCAAACAUGUC   62 Target Full Sequence	3.0	TSA: Zea mays contig43138, mRNA sequence	NA	coding protein	psRNATarget
EU950960.1	ncRNA:24   UC-AAU-CGGUGUUUGGUUUGUACAG   1   ||-||=-||||||||||||||||||= targets:172   AGCUUGUGCCACAAACCAAACAUGUU   197 Target Full Sequence	3.0	Zea mays clone 677055 mRNA sequence	NA	coding protein	psRNATarget
XM_008671335.2	ncRNA:24   UC-AAU-CGGUGUUUGGUUUGUACAG   1   ||-||=-||||||||||||||||||= targets:1445   AGCUUGUGCCACAAACCAAACAUGUU   1470 Target Full Sequence	3.0	PREDICTED: Zea mays actin-like (LOC103646627), mRNA	NA	coding protein	psRNATarget
XM_008650467.2	ncRNA:24   UCAAU-CGGUGUUUGGUUUGUACAG   1   **||=-||||||||||||||||||= targets:521   UCUUGUGCCACAAACCAAACAUGUU   545 Target Full Sequence	3.0	PREDICTED: Zea mays enoyl-CoA hydratase 2, peroxisomal (LOC103629303), mRNA	NA	coding protein	psRNATarget