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BaseInfo

ncRNA ID novel_zma_miR11369
Species Zea mays
Class miRNA
Genome position Chr1:192798063-192798258 [-]
Reference genome RefGen_v4
Source SRR5100255
Length 24
Mature sequence(if miRNA) 173 - AGAGAAUGUUUGGUUUAUAUGGAC - 196
Stem-loop(if miRNA) ---A   AA          A    G   AAU        CA   -                 AUC         CUU     GA   C      AG  CU
    GAG  UGUUUGGUUU UAUG ACU   UUUUUAGU  CUU UAUUUUAUUUCAUUUUA   CCUAAAUUG   AAUAU  AGA UAAAAU  AA  A
    |||  |||||||||| |||| |||   ||||||||  ||| |||||||||||||||||   |||||||||   |||||  ||| ||||||  ||  A
    CUC  AUAAACCAAA AUAC UGA   AAAAAUCA  GAA GUAAAAUAAGGUAAAAU   GGAUUUAAC   UUAUG  UUU AUUUUA  UU  A
GAUG   -C          G    -   AUU        -A   U                 CAA         AAU     UC   A      CA  UA
Stem-loop sequence AGAGAAUGUUUGGUUUAUAUGGACUAAUUUUUUAGUCACUUUAUUUUAUUUCAUUUUAAUCCCUAAAUUGCUUAAUAUGAAGACUAAAAUAGAACUAAAAUUUACAUUUUAAUUUCUGUAUUUAACAAUUUAGGAACUAAAAUGGAAUAAAAUGUAAGAACUAAAAAUUAAGUCAUAGAAACCAAAUACCUCGUAG

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
EZ107034.1
ncRNA:24   CAGGUAUAUUUGGUUUGUAAGAGA   1
  **|*||||||||||||||*|||||
targets:803   AGCGAUAUAAACCAAACACUCUCU   826

1.5 TSA: Zea mays contig42692, mRNA sequence NA coding protein psRNATarget
BT019277.1
ncRNA:24   CAGGUAUAUUUGGUUUGUAAGAGA   1
  **|*||||||||||||||*|||||
targets:744   AGCGAUAUAAACCAAACACUCUCU   767

1.5 Zea mays clone Contig950.F mRNA sequence NA coding protein psRNATarget