ncRNA ID | novel_zma_miR11369 |
Species | Zea mays |
Class | miRNA |
Genome position | Chr1:192798063-192798258 [-] |
Reference genome | RefGen_v4 |
Source | SRR5100255 |
Length | 24 |
Mature sequence(if miRNA) | 173 - AGAGAAUGUUUGGUUUAUAUGGAC - 196 |
Stem-loop(if miRNA) |
---A   AA          A    G   AAU        CA   -                 AUC         CUU     GA   C      AG  CU     GAG  UGUUUGGUUU UAUG ACU   UUUUUAGU  CUU UAUUUUAUUUCAUUUUA   CCUAAAUUG   AAUAU  AGA UAAAAU  AA  A     |||  |||||||||| |||| |||   ||||||||  ||| |||||||||||||||||   |||||||||   |||||  ||| ||||||  ||  A     CUC  AUAAACCAAA AUAC UGA   AAAAAUCA  GAA GUAAAAUAAGGUAAAAU   GGAUUUAAC   UUAUG  UUU AUUUUA  UU  A GAUG   -C          G    -   AUU        -A   U                 CAA         AAU     UC   A      CA  UA |
Stem-loop sequence | AGAGAAUGUUUGGUUUAUAUGGACUAAUUUUUUAGUCACUUUAUUUUAUUUCAUUUUAAUCCCUAAAUUGCUUAAUAUGAAGACUAAAAUAGAACUAAAAUUUACAUUUUAAUUUCUGUAUUUAACAAUUUAGGAACUAAAAUGGAAUAAAAUGUAAGAACUAAAAAUUAAGUCAUAGAAACCAAAUACCUCGUAG |
Target Acc | Alignment | Exception | Target Description | Target Gene Name | Target Type | Method | |||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
EZ107034.1 |
|
1.5 | TSA: Zea mays contig42692, mRNA sequence | NA | coding protein | psRNATarget | |||||||||
BT019277.1 |
|
1.5 | Zea mays clone Contig950.F mRNA sequence | NA | coding protein | psRNATarget |