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BaseInfo

ncRNA ID novel_zma_miR11356
Species Zea mays
Class miRNA
Genome position Chr10:111311016-111311075 [+]
Reference genome RefGen_v4
Source SRR5100248
Length 24
Mature sequence(if miRNA) 1 - AUAGGUACCUGAGCGCGCAACGCC - 24
Stem-loop(if miRNA) -AU     C     C     -A  -     
   AGGUA CUGAG GCGCA  CG CCUUGA
   ||||| ||||| |||||  || |||||G
   UCCAU GACUC CGUGU  GC GGAAUC
GGU     C     C     AC  A     
Stem-loop sequence AUAGGUACCUGAGCGCGCAACGCCUUGAGCUAAGGACGCAUGUGCCCUCAGCUACCUUGG

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
EU969222.1
ncRNA:24   CCGCAACGCGCGAGUCCAUGGAUA   1
  |||||||*||||||||||||||||
targets:618   GGCGUUGGGCGCUCAGGUACCUAU   641

1.0 Zea mays clone 327027 hypothetical protein mRNA, complete cds NA coding protein psRNATarget
XM_008661405.2
ncRNA:24   CCGCAACGCGCGAGUCCAUGGAUA   1
  |||||||*||||||||||||||||
targets:745   GGCGUUGGGCGCUCAGGUACCUAU   768

1.0 PREDICTED: Zea mays uncharacterized LOC103638507 (LOC103638507), mRNA NA coding protein psRNATarget
BT019125.1
ncRNA:24   CCGCAACGCGCGAGUCCAUGGAUA   1
  ||||*||*|||=||||||||||||
targets:391   GGCGCUGGGCGUUCAGGUACCUAU   414

2.5 Zea mays clone Contig739.F mRNA sequence NA coding protein psRNATarget