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BaseInfo

ncRNA ID	novel_zma_miR11355
Species	Zea mays
Class	miRNA
Genome position	Chr1:24670962-24671040 [+]
Reference genome	RefGen_v4
Source	SRR5100248
Length	21
Mature sequence(if miRNA)	59 - UCAAUACAUGUAGAUUGAGCU - 79
Stem-loop(if miRNA)	--      UC    A       C  U     A CG   AU   CUUAAU  ACGU UGUUGAG UG AUUGA G  UAA  U   ||||||  |||| ||||||| || ||||| |  |||   GAGUUA  UGUA AUAACUU AC UAACU C  AUU  A UC      GA    C       C  U     - AA   GG
Stem-loop sequence	CUUAAUUCACGUAUGUUGAGCUGUAUUGAAGCGUAAAUUAGGUUAAACUCAAUUCACUUCAAUACAUGUAGAUUGAGCU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
BT019068.1	ncRNA:21   UCGAGUUAGAUGUACAUAACU   1   ||||||||||||||||||||| targets:173   AGCUCAAUCUACAUGUAUUGA   193 Target Full Sequence	0.0	Zea mays clone Contig631.F mRNA sequence	NA	coding protein	psRNATarget
HI402966.1	ncRNA:21   UCGAGUUAGAUGUACAUAACU   1   |*||||||||||||||||||| targets:10   AUCUCAAUCUACAUGUAUUGA   30 Target Full Sequence	0.0	Sequence 1091 from Patent EP2074227	NA	coding protein	psRNATarget
JB163427.1	ncRNA:21   UCGAGUUAGAUGUACAUAACU   1   |*||||||||||||||||||| targets:10   AUCUCAAUCUACAUGUAUUGA   30 Target Full Sequence	0.0	Sequence 1091 from Patent EP2559767	NA	coding protein	psRNATarget
LQ235096.1	ncRNA:21   UCGAGUUAGAUGUACAUAACU   1   |*||||||||||||||||||| targets:10   AUCUCAAUCUACAUGUAUUGA   30 Target Full Sequence	0.0	Sequence 1091 from Patent EP2985353	NA	coding protein	psRNATarget
JB163470.1	ncRNA:21   UCGAGUUAGAUGUACAUAACU   1   |*|||||||*||||||||||| targets:10   ACCUCAAUCCACAUGUAUUGA   30 Target Full Sequence	1.5	Sequence 1134 from Patent EP2559767	NA	coding protein	psRNATarget
LQ235139.1	ncRNA:21   UCGAGUUAGAUGUACAUAACU   1   |*|||||||*||||||||||| targets:10   ACCUCAAUCCACAUGUAUUGA   30 Target Full Sequence	1.5	Sequence 1134 from Patent EP2985353	NA	coding protein	psRNATarget
HI403009.1	ncRNA:21   UCGAGUUAGAUGUACAUAACU   1   |*|||||||*||||||||||| targets:10   ACCUCAAUCCACAUGUAUUGA   30 Target Full Sequence	1.5	Sequence 1134 from Patent EP2074227	NA	coding protein	psRNATarget
LQ235147.1	ncRNA:21   UCGAGUUAGAUGUACAUAACU   1   |*|||||||*||||||||||| targets:10   ACCUCAAUCCACAUGUAUUGA   30 Target Full Sequence	1.5	Sequence 1142 from Patent EP2985353	NA	coding protein	psRNATarget
HI403017.1	ncRNA:21   UCGAGUUAGAUGUACAUAACU   1   |*|||||||*||||||||||| targets:10   ACCUCAAUCCACAUGUAUUGA   30 Target Full Sequence	1.5	Sequence 1142 from Patent EP2074227	NA	coding protein	psRNATarget
JB163478.1	ncRNA:21   UCGAGUUAGAUGUACAUAACU   1   |*|||||||*||||||||||| targets:10   ACCUCAAUCCACAUGUAUUGA   30 Target Full Sequence	1.5	Sequence 1142 from Patent EP2559767	NA	coding protein	psRNATarget
LQ235080.1	ncRNA:21   UCGAGUUAGAUGUACAUAACU   1   |*|||||||*||||||||||| targets:10   ACCUCAAUCCACAUGUAUUGA   30 Target Full Sequence	1.5	Sequence 1075 from Patent EP2985353	NA	coding protein	psRNATarget
JB163411.1	ncRNA:21   UCGAGUUAGAUGUACAUAACU   1   |*|||||||*||||||||||| targets:10   ACCUCAAUCCACAUGUAUUGA   30 Target Full Sequence	1.5	Sequence 1075 from Patent EP2559767	NA	coding protein	psRNATarget
HI402950.1	ncRNA:21   UCGAGUUAGAUGUACAUAACU   1   |*|||||||*||||||||||| targets:10   ACCUCAAUCCACAUGUAUUGA   30 Target Full Sequence	1.5	Sequence 1075 from Patent EP2074227	NA	coding protein	psRNATarget
JB163457.1	ncRNA:21   UCGAGUUAGAUGUACAUAACU   1   |*|||||||*||||||||||| targets:10   ACCUCAAUCCACAUGUAUUGA   30 Target Full Sequence	1.5	Sequence 1121 from Patent EP2559767	NA	coding protein	psRNATarget
LQ235126.1	ncRNA:21   UCGAGUUAGAUGUACAUAACU   1   |*|||||||*||||||||||| targets:10   ACCUCAAUCCACAUGUAUUGA   30 Target Full Sequence	1.5	Sequence 1121 from Patent EP2985353	NA	coding protein	psRNATarget
HI402996.1	ncRNA:21   UCGAGUUAGAUGUACAUAACU   1   |*|||||||*||||||||||| targets:10   ACCUCAAUCCACAUGUAUUGA   30 Target Full Sequence	1.5	Sequence 1121 from Patent EP2074227	NA	coding protein	psRNATarget
XM_020546136.1	ncRNA:21   UCGAGUUAGAUGUACAUAACU   1   **|||||||||||||*||||| targets:3289   CACUCAAUCUACAUGGAUUGA   3309 Target Full Sequence	1.5	PREDICTED: Zea mays protein FAR1-RELATED SEQUENCE 6 (LOC103642139), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_020546135.1	ncRNA:21   UCGAGUUAGAUGUACAUAACU   1   **|||||||||||||*||||| targets:3142   CACUCAAUCUACAUGGAUUGA   3162 Target Full Sequence	1.5	PREDICTED: Zea mays protein FAR1-RELATED SEQUENCE 6 (LOC103642139), transcript variant X1, mRNA	NA	coding protein	psRNATarget
NM_001176099.1	ncRNA:21   UCGAGUUAGAUGUACAUAACU   1   **|||||||||||||*||||| targets:2647   CUCUCAAUCUACAUGGAUUGA   2667 Target Full Sequence	1.5	Zea mays uncharacterized LOC100383449 (cl10306_1(732)), mRNA	NA	coding protein	psRNATarget
BT067252.1	ncRNA:21   UCGAGUUAGAUGUACAUAACU   1   **|||||||||||||*||||| targets:2647   CUCUCAAUCUACAUGGAUUGA   2667 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFb0348A16 mRNA, complete cds	NA	coding protein	psRNATarget
EU948930.1	ncRNA:21   UCGAGUUAGAUGUACAUAACU   1   **|||||||||||||*||||| targets:430   CACUCAAUCUACAUGGAUUGA   450 Target Full Sequence	1.5	Zea mays clone 390579 mRNA sequence	NA	coding protein	psRNATarget
AY112141.1	ncRNA:21   UCGAGUUAGAUGUACAUAACU   1   **|||||||||||||*||||| targets:238   CACUCAAUCUACAUGGAUUGA   258 Target Full Sequence	1.5	Zea mays CL24213_1 mRNA sequence	NA	coding protein	psRNATarget