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BaseInfo

ncRNA ID	novel_zma_miR11320
Species	Zea mays
Class	miRNA
Genome position	Chr9:46092277-46092356 [+]
Reference genome	RefGen_v4
Source	SRR5100248
Length	21
Mature sequence(if miRNA)	1 - CAUGUGUAUUGGGUGGGAUUG - 21
Stem-loop(if miRNA)	--                      AA   A   U  -  UG   CAUGUGUAUUGGGUGGGAUUGG  UGG UUU GA CU  U   ||||||||||||||||||||||  ||| ||| || ||   GUGUACAUAACCCACCCUAACU  GCC AAA UU GG  U AG                      CG   -   U  A  UA
Stem-loop sequence	CAUGUGUAUUGGGUGGGAUUGGAAUGGAUUUUGACUUGUUAUGGAUUUAAACCGGCUCAAUCCCACCCAAUACAUGUGGA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_008678388.2	ncRNA:21   GUUAGGGUGGGUUAUGUGUAC   1   ||||||||||||||*|||||| targets:1831   CAAUCCCACCCAAUCCACAUG   1851 Target Full Sequence	1.5	PREDICTED: Zea mays RNA-binding motif protein, X-linked 2 (LOC100282627), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_008678390.2	ncRNA:21   GUUAGGGUGGGUUAUGUGUAC   1   ||||||||||||||*|||||| targets:1815   CAAUCCCACCCAAUCCACAUG   1835 Target Full Sequence	1.5	PREDICTED: Zea mays RNA-binding motif protein, X-linked 2 (LOC100282627), transcript variant X2, mRNA	NA	coding protein	psRNATarget
JB169733.1	ncRNA:21   GUUAGGGUGGGUUAUGUGUAC   1   ||||||||||||||*|||||| targets:78   CAAUCCCACCCAAUCCACAUG   98 Target Full Sequence	1.5	Sequence 7397 from Patent EP2559767	NA	coding protein	psRNATarget
HI409272.1	ncRNA:21   GUUAGGGUGGGUUAUGUGUAC   1   ||||||||||||||*|||||| targets:78   CAAUCCCACCCAAUCCACAUG   98 Target Full Sequence	1.5	Sequence 7397 from Patent EP2074227	NA	coding protein	psRNATarget
LQ241402.1	ncRNA:21   GUUAGGGUGGGUUAUGUGUAC   1   ||||||||||||||*|||||| targets:78   CAAUCCCACCCAAUCCACAUG   98 Target Full Sequence	1.5	Sequence 7397 from Patent EP2985353	NA	coding protein	psRNATarget
EU957741.1	ncRNA:21   GUUAGGGUGGGUUAUGUGUAC   1   |||||=||||||||*|||||| targets:1403   CAAUCUCACCCAAUCCACAUG   1423 Target Full Sequence	2.5	Zea mays clone 1613489 mRNA sequence	NA	coding protein	psRNATarget
EU957033.1	ncRNA:21   GUUAGGGUGGGUUAUGUGUAC   1   |||||=||||||||*|||||| targets:1402   CAAUCUCACCCAAUCCACAUG   1422 Target Full Sequence	2.5	Zea mays clone 1581039 mRNA sequence	NA	coding protein	psRNATarget
BT066441.1	ncRNA:21   GUUAGGGUGGGUUAUGUGUAC   1   =|||||||||||||*|||||| targets:1531   UAAUCCCACCCAAUCCACAUG   1551 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFc0165B04 mRNA, complete cds	NA	coding protein	psRNATarget
BT035134.1	ncRNA:21   GUUAGGGUGGGUUAUGUGUAC   1   |||||=||||||||*|||||| targets:1220   CAAUCUCACCCAAUCCACAUG   1240 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0041I21 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001138165.1	ncRNA:21   GUUAGGGUGGGUUAUGUGUAC   1   |||||=||||||||*|||||| targets:1220   CAAUCUCACCCAAUCCACAUG   1240 Target Full Sequence	2.5	Zea mays B3 domain-containing protein (LOC100192994), mRNA	NA	coding protein	psRNATarget
XM_008647186.1	ncRNA:21   GUUAGGGUGGGUUAUGUGUAC   1   |||||=||||||||*|||||| targets:1058   CAAUCUCACCCAAUCCACAUG   1078 Target Full Sequence	2.5	PREDICTED: Zea mays B3 domain-containing protein (LOC100192994), transcript variant X1, mRNA	NA	coding protein	psRNATarget
BT087300.1	ncRNA:21   GUUAGGGUGGGUUAUGUGUAC   1   |||||=||||||||*|||||| targets:1025   CAAUCUCACCCAAUCCACAUG   1045 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0032O11 mRNA, complete cds	NA	coding protein	psRNATarget