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BaseInfo

ncRNA ID	novel_zma_miR11314
Species	Zea mays
Class	miRNA
Genome position	Chr9:36617617-36617682 [+]
Reference genome	RefGen_v4
Source	SRR5100248
Length	25
Mature sequence(if miRNA)	42 - CCUCCAAUCCUCCCGGGAUCCCUUU - 66
Stem-loop(if miRNA)	--U                            UA    GGGAUCCCGGGAGGAUUGGAGGGGAAAU  G    ||||||||||||||||||||||||||||    CCCUAGGGCCCUCCUAACCUCCCCUUUA  U UUU                            UU
Stem-loop sequence	UGGGAUCCCGGGAGGAUUGGAGGGGAAAUUAGUUUAUUUCCCCUCCAAUCCUCCCGGGAUCCCUUU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
LQ235148.1	ncRNA:25   UUUCCCUAGGGCCCUCCUAACCUCC   1   ||=||||||||||||||||||*||| targets:4   AAGGGGAUCCCGGGAGGAUUGAAGG   28 Target Full Sequence	1.5	Sequence 1143 from Patent EP2985353	NA	coding protein	psRNATarget
JB163479.1	ncRNA:25   UUUCCCUAGGGCCCUCCUAACCUCC   1   ||=||||||||||||||||||*||| targets:4   AAGGGGAUCCCGGGAGGAUUGAAGG   28 Target Full Sequence	1.5	Sequence 1143 from Patent EP2559767	NA	coding protein	psRNATarget
HI403018.1	ncRNA:25   UUUCCCUAGGGCCCUCCUAACCUCC   1   ||=||||||||||||||||||*||| targets:4   AAGGGGAUCCCGGGAGGAUUGAAGG   28 Target Full Sequence	1.5	Sequence 1143 from Patent EP2074227	NA	coding protein	psRNATarget
XM_020551688.1	ncRNA:25   UUUCCCUAGGGCCCUCCUAACCUCC   1   ||=|||||||||*|||||||||||| targets:2100   AAGGGGAUCCCGAGAGGAUUGGAGG   2124 Target Full Sequence	1.5	PREDICTED: Zea mays hypothetical protein (LOC100383632), transcript variant X1, mRNA	NA	coding protein	psRNATarget
EZ106816.1	ncRNA:25   UUUCCCUAGGGCCCUCCUAACCUCC   1   ***|||||=|||||||||||||||| targets:247   CCCGGGAUUCCGGGAGGAUUGGAGG   271 Target Full Sequence	1.0	TSA: Zea mays contig42474, mRNA sequence	NA	coding protein	psRNATarget
XM_020543595.1	ncRNA:25   UUUCCCUAGGGCCCUCCUAACCUCC   1   |||||||||*|||||||||||*||| targets:1467   AAAGGGAUCACGGGAGGAUUGUAGG   1491 Target Full Sequence	2.5	PREDICTED: Zea mays uncharacterized LOC109942132 (LOC109942132), mRNA	NA	coding protein	psRNATarget
XM_020540504.1	ncRNA:25   UUUCC-CUAGGGCCCUCCUAACCUCC   1   *||||-|||||=|*|||||||||||| targets:1796   CAAGGAGAUCCUGAGAGGAUUGGAGG   1821 Target Full Sequence	2.5	PREDICTED: Zea mays nucleolar RNA helicase 2 (LOC100281387), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_020540503.1	ncRNA:25   UUUCC-CUAGGGCCCUCCUAACCUCC   1   *||||-|||||=|*|||||||||||| targets:2234   CAAGGAGAUCCUGAGAGGAUUGGAGG   2259 Target Full Sequence	2.5	PREDICTED: Zea mays nucleolar RNA helicase 2 (LOC100281387), transcript variant X1, mRNA	NA	coding protein	psRNATarget
BT088155.1	ncRNA:25   UUUC-CCUAGGGCCCUCCUAACCUCC   1   *|||-|||||*|||||||||||*||| targets:1422   CAAGUGGAUCACGGGAGGAUUGAAGG   1447 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFc0038D09 mRNA, complete cds	NA	coding protein	psRNATarget
LQ241793.1	ncRNA:25   UUUCCCUAGGGCCCUCCUAACCUCC   1   ***||||||||*|||||||*||||| targets:17   CCCGGGAUCCCAGGAGGAUCGGAGG   41 Target Full Sequence	2.5	Sequence 7788 from Patent EP2985353	NA	coding protein	psRNATarget
JB170124.1	ncRNA:25   UUUCCCUAGGGCCCUCCUAACCUCC   1   ***||||||||*|||||||*||||| targets:17   CCCGGGAUCCCAGGAGGAUCGGAGG   41 Target Full Sequence	2.5	Sequence 7788 from Patent EP2559767	NA	coding protein	psRNATarget
HI409663.1	ncRNA:25   UUUCCCUAGGGCCCUCCUAACCUCC   1   ***||||||||*|||||||*||||| targets:17   CCCGGGAUCCCAGGAGGAUCGGAGG   41 Target Full Sequence	2.5	Sequence 7788 from Patent EP2074227	NA	coding protein	psRNATarget
EU961132.1	ncRNA:25   UUUCCCUAGGGCCCUCCUAACCUCC   1   ***||||||||*|||||||*||||| targets:771   CCCGGGAUCCCAGGAGGAUCGGAGG   795 Target Full Sequence	2.5	Zea mays clone 232865 phospholipid hydroperoxide glutathione peroxidase mRNA, complete cds	NA	coding protein	psRNATarget
BT040716.2	ncRNA:25   UUUCCCUAGGGCCCUCCUAACCUCC   1   ***||||||||*|||||||*||||| targets:810   CCCGGGAUCCCAGGAGGAUCGGAGG   834 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFc0120F10 mRNA, complete cds	NA	coding protein	psRNATarget
BT066291.1	ncRNA:25   UUUCCCUAGGGCCCUCCUAACCUCC   1   ***||||||||*|||||||*||||| targets:815   CCCGGGAUCCCAGGAGGAUCGGAGG   839 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFc0176M03 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001147738.1	ncRNA:25   UUUCCCUAGGGCCCUCCUAACCUCC   1   ***||||||||*|||||||*||||| targets:815   CCCGGGAUCCCAGGAGGAUCGGAGG   839 Target Full Sequence	2.5	Zea mays putative glutathione peroxidase (LOC100273297), mRNA	NA	coding protein	psRNATarget