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BaseInfo

ncRNA ID	novel_zma_miR11312
Species	Zea mays
Class	miRNA
Genome position	Chr9:30422738-30422823 [+]
Reference genome	RefGen_v4
Source	SRR5100248
Length	19
Mature sequence(if miRNA)	1 - UGAAGAGCAAAUUGGUACC - 19
Stem-loop(if miRNA)	--         -A     -  CC     --UC     UC -       UGAAGAGCA  AUUGG UA  UGGAA    UCAAG  C CAAGC   |||||||||  ||||| ||  |||||    |||||  | ||||A   AUUUCUUGU  UAACC AU  AUUUU    AGUUC  G GUUCA AU         AA     C  UU     CACU     CC U
Stem-loop sequence	UGAAGAGCAAAUUGGUACCUGGAAUCUCAAGUCCCAAGCAACUUGUGCCCUUGAUCACUUUUAUUUACCCAAUAAUGUUCUUUAUA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
EZ051118.1	ncRNA:19   CCAUGGUUAAACGAGAAGU   1   ||||||||*|||||||||| targets:161   GGUACCAACUUGCUCUUCA   179 Target Full Sequence	1.5	TSA: Zea mays contig52238, mRNA sequence	NA	coding protein	psRNATarget
BT054688.2	ncRNA:19   CCAUGGUUAAACGAGAAGU   1   ||||||||*|||||||||| targets:1152   GGUACCAACUUGCUCUUCA   1170 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFb0082P04 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001279849.1	ncRNA:19   CCAUGGUUAAACGAGAAGU   1   ||||||||*|||||||||| targets:205   GGUACCAACUUGCUCUUCA   223 Target Full Sequence	1.5	Zea mays uncharacterized LOC101061002 (LOC101061002), mRNA	NA	coding protein	psRNATarget
BT054676.2	ncRNA:19   CCAUGGUUAAACGAGAAGU   1   ||||||||*|||||||||| targets:205   GGUACCAACUUGCUCUUCA   223 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFb0066P18 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001175762.1	ncRNA:19   CCAUGGUUAAACGAGAAGU   1   ||||||||*|||||||||| targets:1155   GGUACCAACUUGCUCUUCA   1173 Target Full Sequence	1.5	Zea mays uncharacterized LOC100383091 (LOC100383091), mRNA	NA	coding protein	psRNATarget
BT066164.2	ncRNA:19   CCAUGGUUAAACGAGAAGU   1   ||||||||*|||||||||| targets:1155   GGUACCAACUUGCUCUUCA   1173 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFc0047C23 mRNA, complete cds	NA	coding protein	psRNATarget
EU940976.1	ncRNA:19   CCAUGGUUAAACGAGAAGU   1   ||||||||*|||||||||| targets:1115   GGUACCAACUUGCUCUUCA   1133 Target Full Sequence	1.5	Zea mays clone 1226050 mRNA sequence	NA	coding protein	psRNATarget
XM_008681380.2	ncRNA:19   CCAUGGUUAAACGAGAAGU   1   |||=||||||||||*|||| targets:989   GGUGCCAAUUUGCUGUUCA   1007 Target Full Sequence	2.5	PREDICTED: Zea mays uncharacterized LOC103654544 (LOC103654544), mRNA	NA	coding protein	psRNATarget
BT084566.2	ncRNA:19   CCAUGGUUAAACGAGAAGU   1   ||||=|||*|||||||||| targets:1167   GGUAUCAACUUGCUCUUCA   1185 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0133J03 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001175687.1	ncRNA:19   CCAUGGUUAAACGAGAAGU   1   *|||||||*|||||||||| targets:1237   AGUACCAACUUGCUCUUCA   1255 Target Full Sequence	2.5	Zea mays uncharacterized LOC100383005 (LOC100383005), mRNA	NA	coding protein	psRNATarget
BT065921.2	ncRNA:19   CCAUGGUUAAACGAGAAGU   1   *|||||||*|||||||||| targets:1237   AGUACCAACUUGCUCUUCA   1255 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFc0044K19 mRNA, complete cds	NA	coding protein	psRNATarget