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BaseInfo

ncRNA ID novel_zma_miR11297
Species Zea mays
Class miRNA
Genome position Chr9:48171579-48171637 [-]
Reference genome RefGen_v4
Source SRR5100248;SRR5100255
Length 23
Mature sequence(if miRNA) 1 - AAUGCUUCAGAGGACGAAGGCCU - 23
Stem-loop(if miRNA) --A         ---    AU      A   C
   CCUUCGUCU   GAAG  CAUUAU UCC A
   |||||||||   ||||  |||||| |||
   GGAAGCAGG   CUUC  GUAAUA AGG A
UCC         AGA    --      G   G
Stem-loop sequence ACCUUCGUCUGAAGAUCAUUAUAUCCCAAGGGAGAUAAUGCUUCAGAGGACGAAGGCCU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
EU949769.1
ncRNA:23   UCCGGAAGCAGGAGACUUCGUAA   1
  *|*||||||||||=|||||||||
targets:560   UGUCCUUCGUCCUUUGAAGCAUU   582

1.5 Zea mays clone 444433 mRNA sequence NA coding protein psRNATarget
EU945045.1
ncRNA:23   UCCGGAAGCAGGAGACUUCGUAA   1
  ||*|||||||||||*||||||||
targets:587   AGUCCUUCGUCCUCCGAAGCAUU   609

1.5 Zea mays clone 239103 mRNA sequence NA coding protein psRNATarget