Search result

BaseInfo

ncRNA ID novel_zma_miR11295
Species Zea mays
Class miRNA
Genome position Chr1:14854568-14854773 [+]
Reference genome RefGen_v4
Source SRR5100248
Length 21
Mature sequence(if miRNA) 1 - AAGUAGAAGAUGUUUGUAGUC - 21
Stem-loop(if miRNA) --AAG     G                        C          C  A           C                                   U   UA
     UAGAA AUGUUUGUAGUCCCUUUUUUGUGA GUAAAUCUUU GG UGACAAUAUUG GAAGCGCUAUGUUUAGAGUCCCAAAUAUACAAUUA CUU  U
     ||||| |||||||||||||||||||||||| |||||||||| || ||||||||||| ||||||||||||||||||||||||||||||||||| |||
     AUCUU UAUAAACAUCAGGGAAAAAACGCU CAUUUAGAAA CC ACUGUUAUAAC CUUUGUGAUACAAAUCUCAGGGUUUAUAUGUUAAU GAG  C
UGUUA     G                        U          A  C           A                                   C   UC
Stem-loop sequence AAGUAGAAGAUGUUUGUAGUCCCUUUUUUGUGACGUAAAUCUUUCGGAUGACAAUAUUGCGAAGCGCUAUGUUUAGAGUCCCAAAUAUACAAUUAUCUUUAUCCUGAGCUAAUUGUAUAUUUGGGACUCUAAACAUAGUGUUUCACAAUAUUGUCACCCAAAAGAUUUACUUCGCAAAAAAGGGACUACAAAUAUGUUCUAAUUGU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
EU941959.1
ncRNA:21   CUGAUGUUUGUAGAAGAUGAA   1
  ||=|||||||||||||||*||
targets:148   GAUUACAAACAUCUUCUAAUU   168

2.5 Zea mays clone 1472937 mRNA sequence NA coding protein psRNATarget
XM_008656417.2
ncRNA:21   CUGAUGUUUGUAGAAGAUGAA   1
  ||=|||||||||||||||*||
targets:1745   GAUUACAAACAUCUUCUAAUU   1765

2.5 PREDICTED: Zea mays UDP-glycosyltransferase 74B1 (LOC100274322), transcript variant X1, mRNA NA coding protein psRNATarget
AY111137.1
ncRNA:21   CUGAUGUUUGUAGAAGAUGAA   1
  *|||||=|||||||||||*||
targets:764   CACUACGAACAUCUUCUAAUU   784

2.5 Zea mays CL15172_2 mRNA sequence NA coding protein psRNATarget
XM_008662106.2
ncRNA:21   CUGAUGUUUGUAGAAGAUGAA   1
  |=||||*=||||||||||||*
targets:5300   GGCUACUGACAUCUUCUACUC   5320

3.0 PREDICTED: Zea mays putative ribonuclease H protein At1g65750 (LOC103639340), transcript variant X1, mRNA NA coding protein psRNATarget
© 2017 OPP-ncRBASE. All rights reserved.