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BaseInfo

ncRNA ID	novel_zma_miR11290
Species	Zea mays
Class	miRNA
Genome position	Chr8:162680163-162680256 [+]
Reference genome	RefGen_v4
Source	SRR1997865
Length	24
Mature sequence(if miRNA)	71 - UGAUUUCGUAGCAACGCACGGGCA - 94
Stem-loop(if miRNA)	--U              A               C     UU   AUA    UUGUGUGUUGUUAC AAAUUAAUAUGAUAA AUACA  GAU   C    |||||||||||||| ||||||||||||||| |||||  |||    GGCACGCAACGAUG UUUAGUUAUAUUAUU UAUGU  UUA   C ACG              C               U     UG   AAA
Stem-loop sequence	UUUGUGUGUUGUUACAAAAUUAAUAUGAUAACAUACAUUGAUAUACCAAAAUUGUUGUAUUUUAUUAUAUUGAUUUCGUAGCAACGCACGGGCA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
NM_001165433.1	ncRNA:24   ACGGGCACGCAACGAUGCUUUAGU   1   ||||||||||||||||||=||||| targets:591   UGCCCGUGCGUUGCUACGGAAUCA   614 Target Full Sequence	1.5	Zea mays AtS40-3 (LOC100303799), mRNA	NA	coding protein	psRNATarget
BT040517.1	ncRNA:24   ACGGGCACGCAACGAUGCUUUAGU   1   ||||||||||||||||||=||||| targets:591   UGCCCGUGCGUUGCUACGGAAUCA   614 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFc0098J20 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001157052.1	ncRNA:24   ACGGGCACGCAACGAUGCUUUAGU   1   ||||||||||||||||||=||||| targets:667   UGCCCGUGCGUUGCUACGGAAUCA   690 Target Full Sequence	1.5	Zea mays nuclear protein (LOC100284155), mRNA	NA	coding protein	psRNATarget
EU967295.1	ncRNA:24   ACGGGCACGCAACGAUGCUUUAGU   1   ||||||||||||||||||=||||| targets:667   UGCCCGUGCGUUGCUACGGAAUCA   690 Target Full Sequence	1.5	Zea mays clone 301197 nuclear protein mRNA, complete cds	NA	coding protein	psRNATarget
EU947553.1	ncRNA:24   ACGGGCACGCAACGAUGCUUUAGU   1   |||*|||||||||||||||||||| targets:848   UGCACGUGCGUUGCUACGAAAUCA   871 Target Full Sequence	0.0	Zea mays clone 346992 mRNA sequence	NA	coding protein	psRNATarget
EZ082926.1	ncRNA:24   ACGGGCACGCAACGAUGCUUUAGU   1   |*||||||||||||||||=||||| targets:5   UACCCGUGCGUUGCUACGGAAUCA   28 Target Full Sequence	1.5	TSA: Zea mays contig18569, mRNA sequence	NA	coding protein	psRNATarget