Search result

BaseInfo

ncRNA ID	novel_zma_miR11289
Species	Zea mays
Class	miRNA
Genome position	Chr10:73523304-73523483 [-]
Reference genome	RefGen_v4
Source	SRR1583942
Length	21
Mature sequence(if miRNA)	1 - CACAUCCGGACAUAGUACACU - 21
Stem-loop(if miRNA)	--      C                                         U   C    C               U  C  CUA     A   UGUACU UGUCCGGAUGUGUGGUCACAAAAUUUAAAGCCGCCCUGGCU CAU UGUG GCUUCUCUUCUCUUA GU GG   CUAAG U   |||||| ||||||||||||||||||||||||||||||||||||||||| ||| |||| ||||||||||||||| || ||   |||||   ACAUGA ACAGGCCUACACACCAGUGUUUUAAAUUUCGGCGGGGCCGA GUA ACAC CGAAGAGAAGAGAAU CA CC   GAUUC C UC      U                                         C   C    A               C  C  CAC     A
Stem-loop sequence	UGUACUCUGUCCGGAUGUGUGGUCACAAAAUUUAAAGCCGCCCUGGCUUCAUCUGUGCGCUUCUCUUCUCUUAUGUCGGCUACUAAGAUCACUUAGCACCCCACCUAAGAGAAGAGAAGCACACACAUGCAGCCGGGGCGGCUUUAAAUUUUGUGACCACACAUCCGGACAUAGUACACU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_020538582.1	ncRNA:21   UCACAUGAUACAGGCCUACAC   1   =|||||||*|||||||||||* targets:3223   GGUGUACUCUGUCCGGAUGUC   3243 Target Full Sequence	2.5	PREDICTED: Zea mays B3 domain-containing protein Os02g0598200 (LOC103628738), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_020538581.1	ncRNA:21   UCACAUGAUACAGGCCUACAC   1   =|||||||*|||||||||||* targets:3361   GGUGUACUCUGUCCGGAUGUC   3381 Target Full Sequence	2.5	PREDICTED: Zea mays B3 domain-containing protein Os02g0598200 (LOC103628738), transcript variant X1, mRNA	NA	coding protein	psRNATarget
NM_001154336.1	ncRNA:21   UCACAUGAUACAGGCCUACAC   1   =||||*||||||*|||||||| targets:602   GGUGUUCUAUGUGCGGAUGUG   622 Target Full Sequence	2.5	Zea mays protein kinase/ transmembrane receptor protein serine/threonine kinase (LOC100281418), mRNA	NA	coding protein	psRNATarget
EU956642.1	ncRNA:21   UCACAUGAUACAGGCCUACAC   1   =||||*||||||*|||||||| targets:602   GGUGUUCUAUGUGCGGAUGUG   622 Target Full Sequence	2.5	Zea mays clone 1569052 protein kinase/ transmembrane receptor protein serine/threonine kinase mRNA, complete cds	NA	coding protein	psRNATarget