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BaseInfo

ncRNA ID	novel_zma_miR11285
Species	Zea mays
Class	miRNA
Genome position	Chr9:73075628-73075821 [-]
Reference genome	RefGen_v4
Source	SRR5100248
Length	24
Mature sequence(if miRNA)	1 - AACUAACACCAUCUACACAACCGC - 24
Stem-loop(if miRNA)	--     CC                             C                      U                      CAG     UC   CU   GGUUG  UAGAUGGUGUUAGUUUCCAUGCUCUACUC GGUCCGAGAUAGAGUUUCGGCG CACCUCCCUGUUGUUCUCCGGA   UACAC  UCC  G   |||||  ||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||   |||||  |||   CCAAC  AUCUACCACAAUCAAAGGUACGAGAUGAG CUAGGCUCUAUCUCAAAGCCGU GUGGAGGGGCGAUAAGAGGCCU   AUGUG  AGG  U CG     AC                             A                      U                      ---     -C   AC
Stem-loop sequence	GGUUGCCUAGAUGGUGUUAGUUUCCAUGCUCUACUCCGGUCCGAGAUAGAGUUUCGGCGUCACCUCCCUGUUGUUCUCCGGACAGUACACUCUCCCUGUCAGGACGUGUAUCCGGAGAAUAGCGGGGAGGUGUUGCCGAAACUCUAUCUCGGAUCAGAGUAGAGCAUGGAAACUAACACCAUCUACACAACCGC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
EZ051702.1	ncRNA:24   CGCCAACACAUCUACCACAAUCAA   1   |||-|||||*|||||||||*|||| targets:36   GCG-UUGUGGAGAUGGUGUCAGUU   58 Target Full Sequence	2.5	TSA: Zea mays contig52822, mRNA sequence	NA	coding protein	psRNATarget
EU959760.1	ncRNA:24   CGCCAACACAUCUACCACAAUCAA   1   |||-|||||*|||||||||*|||| targets:551   GCG-UUGUGGAGAUGGUGUCAGUU   573 Target Full Sequence	2.5	Zea mays clone 219847 mRNA sequence	NA	coding protein	psRNATarget
NM_001165756.1	ncRNA:24   CGCCAACACAUCUACCACAAUCAA   1   |||-|||||*|||||||||*|||| targets:1294   GCG-UUGUGGAGAUGGUGUCAGUU   1316 Target Full Sequence	2.5	Zea mays hypothetical protein (TIDP3424), mRNA	NA	coding protein	psRNATarget
BT060819.1	ncRNA:24   CGCCAACACAUCUACCACAAUCAA   1   |||-|||||*|||||||||*|||| targets:1294   GCG-UUGUGGAGAUGGUGUCAGUU   1316 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0054O07 mRNA, complete cds	NA	coding protein	psRNATarget
XM_008670000.2	ncRNA:24   CGCCAACACAUCUACCACAAUCAA   1   |||-|||||*|||||||||*|||| targets:2482   GCG-UUGUGGAGAUGGUGUCAGUU   2504 Target Full Sequence	2.5	PREDICTED: Zea mays hypothetical protein (TIDP3424), transcript variant X3, mRNA	NA	coding protein	psRNATarget
XM_020547820.1	ncRNA:24   CGCCAACACAUCUACCACAAUCAA   1   |||-|||||*|||||||||*|||| targets:2504   GCG-UUGUGGAGAUGGUGUCAGUU   2526 Target Full Sequence	2.5	PREDICTED: Zea mays hypothetical protein (TIDP3424), transcript variant X4, mRNA	NA	coding protein	psRNATarget
XM_008669998.2	ncRNA:24   CGCCAACACAUCUACCACAAUCAA   1   |||-|||||*|||||||||*|||| targets:2481   GCG-UUGUGGAGAUGGUGUCAGUU   2503 Target Full Sequence	2.5	PREDICTED: Zea mays hypothetical protein (TIDP3424), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_008669999.2	ncRNA:24   CGCCAACACAUCUACCACAAUCAA   1   |||-|||||*|||||||||*|||| targets:2637   GCG-UUGUGGAGAUGGUGUCAGUU   2659 Target Full Sequence	2.5	PREDICTED: Zea mays hypothetical protein (TIDP3424), transcript variant X2, mRNA	NA	coding protein	psRNATarget