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BaseInfo

ncRNA ID	novel_zma_miR11279
Species	Zea mays
Class	miRNA
Genome position	Chr9:103953847-103953918 [-]
Reference genome	RefGen_v4
Source	SRR5100248
Length	24
Mature sequence(if miRNA)	49 - GGUGCACCGGACACUGAACAGUGU - 72
Stem-loop(if miRNA)	--              UGA  A    -         G   GGUGCACCGGACAC   AC GUGU CUGUCCGGU C   ||||||||||||||   || |||| |||||||||   CCACGUGGCCUGUG   UG CACG GACAGGCCA A UG              -UG  A    U         C
Stem-loop sequence	GGUGCACCGGACACUGAACAGUGUCUGUCCGGUGCACACCGGACAGUGCACAGUGUGUGUCCGGUGCACCGU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_020544960.1	ncRNA:24   UGUGACAAGUCACAGGCCACGUGG   1   =|||||||||*||||=|||||||| targets:3172   GCACUGUUCACUGUCUGGUGCACC   3195 Target Full Sequence	2.5	PREDICTED: Zea mays B3 domain-containing protein (IDP832), transcript variant X2, mRNA	NA	coding protein	psRNATarget
EU940845.1	ncRNA:24   UGUGACAAGUCACAGGCCACGUGG   1   *||||||*|||||||||||||||* targets:1292   CCACUGUGCAGUGUCCGGUGCACG   1315 Target Full Sequence	2.0	Zea mays clone 1163633 mRNA sequence	NA	coding protein	psRNATarget
NM_001349964.1	ncRNA:24   UGUGACAAGUCACAGGCCACGUGG   1   *=||||||||*||||||||||=|| targets:2977   UUACUGUUCACUGUCCGGUGCGCC   3000 Target Full Sequence	2.5	Zea mays uncharacterized LOC100278112 (IDP592), mRNA	NA	coding protein	psRNATarget
NM_001176828.1	ncRNA:24   UGUGACAAGUCACAGGCCACGUGG   1   ||||*|**|||||||||||||||| targets:495   ACACCGGACAGUGUCCGGUGCACC   518 Target Full Sequence	2.0	Zea mays uncharacterized LOC100384263 (LOC100384263), mRNA	NA	coding protein	psRNATarget
NM_001176828.1	ncRNA:24   UGUGACAAGUCACAGGCCACGUGG   1   *|||*|**|||||||||||||||| targets:517   CCACCGGACAGUGUCCGGUGCACC   540 Target Full Sequence	2.0	Zea mays uncharacterized LOC100384263 (LOC100384263), mRNA	NA	coding protein	psRNATarget
BT069634.1	ncRNA:24   UGUGACAAGUCACAGGCCACGUGG   1   ||||*|**|||||||||||||||| targets:495   ACACCGGACAGUGUCCGGUGCACC   518 Target Full Sequence	2.0	Zea mays full-length cDNA clone ZM_BFb0193J19 mRNA, complete cds	NA	coding protein	psRNATarget
BT069634.1	ncRNA:24   UGUGACAAGUCACAGGCCACGUGG   1   *|||*|**|||||||||||||||| targets:517   CCACCGGACAGUGUCCGGUGCACC   540 Target Full Sequence	2.0	Zea mays full-length cDNA clone ZM_BFb0193J19 mRNA, complete cds	NA	coding protein	psRNATarget
XM_008650945.1	ncRNA:24   UGUGACAAGUCACAGGCCACGUGG   1   =|||*|**|||||||||||||||| targets:768   GCACCGGACAGUGUCCGGUGCACC   791 Target Full Sequence	2.0	PREDICTED: Zea mays uncharacterized LOC103629851 (LOC103629851), mRNA	NA	coding protein	psRNATarget
EU952069.1	ncRNA:24   UGUGACAAGUCACAGGCCACGUGG   1   =|||*|**|||||||||||||||| targets:776   GCACCGGACAGUGUCCGGUGCACC   799 Target Full Sequence	2.0	Zea mays clone 1155789 hypothetical protein mRNA, complete cds	NA	coding protein	psRNATarget
BT064671.1	ncRNA:24   UGUGACAAGUCACAGGCCACGUGG   1   *|||*|**|||||||||||||||| targets:1007   CCACCGGACAGUGUCCGGUGCACC   1030 Target Full Sequence	2.0	Zea mays full-length cDNA clone ZM_BFb0008J22 mRNA, complete cds	NA	coding protein	psRNATarget
BT060603.1	ncRNA:24   UGUGACAAGUCACAGGCCACGUGG   1   *|||*|**|||||||||||||||| targets:1108   CCACCGGACAGUGUCCGGUGCACC   1131 Target Full Sequence	2.0	Zea mays full-length cDNA clone ZM_BFb0021N16 mRNA, complete cds	NA	coding protein	psRNATarget
LQ241966.1	ncRNA:24   UGUGACAAGUCACAGGCCACGUGG   1   =|||*|**|||||||||||||||* targets:20   GCACCGAACAGUGUCCGGUGCACA   43 Target Full Sequence	3.0	Sequence 7961 from Patent EP2985353	NA	coding protein	psRNATarget
JB170297.1	ncRNA:24   UGUGACAAGUCACAGGCCACGUGG   1   =|||*|**|||||||||||||||* targets:20   GCACCGAACAGUGUCCGGUGCACA   43 Target Full Sequence	3.0	Sequence 7961 from Patent EP2559767	NA	coding protein	psRNATarget
HI409836.1	ncRNA:24   UGUGACAAGUCACAGGCCACGUGG   1   =|||*|**|||||||||||||||* targets:20   GCACCGAACAGUGUCCGGUGCACA   43 Target Full Sequence	3.0	Sequence 7961 from Patent EP2074227	NA	coding protein	psRNATarget
EZ091678.1	ncRNA:24   UGUGACAAGUCACAGGCCACGUGG   1   *|||*|**=||||||||||||||| targets:37   CCACCGGAUAGUGUCCGGUGCACC   60 Target Full Sequence	3.0	TSA: Zea mays contig27327, mRNA sequence	NA	coding protein	psRNATarget
BT042818.1	ncRNA:24   UGUGACAAGUCACAGGCCACGUGG   1   =|||*|**|||||||||||||||* targets:531   GCACCGGACAGUGUCCGGUGCACA   554 Target Full Sequence	3.0	Zea mays full-length cDNA clone ZM_BFc0047A15 mRNA, complete cds	NA	coding protein	psRNATarget