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BaseInfo

ncRNA ID	novel_zma_miR11271
Species	Zea mays
Class	miRNA
Genome position	Chr1:152107281-152107418 [+]
Reference genome	RefGen_v4
Source	SRR5100248
Length	24
Mature sequence(if miRNA)	1 - UAAAAAACCGCCACUAGAAAUCGU - 24
Stem-loop(if miRNA)	---UAA                            G                         C  C            AAAACCGCCACUAGAAAUCGUAUUUCUA UGGCGGUUCCUUAAGAAAACCGCCA UA AAAUCA       |||||||||||||||||||||||||||| ||||||||||||||||||||||||| || |||||U       UUUUGGCGGUGAUCUUUAGCAUAAAGAU ACCGCCAAGGAAUUCUUUUGGCGGU AU UUUAGG GAAUUC                            G                         C  C
Stem-loop sequence	UAAAAAACCGCCACUAGAAAUCGUAUUUCUAGUGGCGGUUCCUUAAGAAAACCGCCACUACAAAUCAUGGAUUUCUACUGGCGGUUUUCUUAAGGAACCGCCAGUAGAAAUACGAUUUCUAGUGGCGGUUUUCUUAAG

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
JB163445.1	ncRNA:24   UGCUAAAGAUCACCGCCAAAA-AAU   1   |=|||||||||||||||||||-||| targets:79   AUGAUUUCUAGUGGCGGUUUUCUUA   103 Target Full Sequence	3.0	Sequence 1109 from Patent EP2559767	NA	coding protein	psRNATarget
HI402984.1	ncRNA:24   UGCUAAAGAUCACCGCCAAAA-AAU   1   |=|||||||||||||||||||-||| targets:79   AUGAUUUCUAGUGGCGGUUUUCUUA   103 Target Full Sequence	3.0	Sequence 1109 from Patent EP2074227	NA	coding protein	psRNATarget
LQ235114.1	ncRNA:24   UGCUAAAGAUCACCGCCAAAA-AAU   1   |=|||||||||||||||||||-||| targets:79   AUGAUUUCUAGUGGCGGUUUUCUUA   103 Target Full Sequence	3.0	Sequence 1109 from Patent EP2985353	NA	coding protein	psRNATarget
HI403012.1	ncRNA:24   UGCUAAAGAUCACCGCCAAAA-AAU   1   |=|||||||||||||||||||-||| targets:7   AUGAUUUCUAGUGGCGGUUUUCUUA   31 Target Full Sequence	3.0	Sequence 1137 from Patent EP2074227	NA	coding protein	psRNATarget
HI403012.1	ncRNA:24   UGCUAAAGAUCACCGCCAAAAAAU   1   |=|||||=|||||*|||||||||| targets:98   AUGAUUUUUAGUGACGGUUUUUUA   121 Target Full Sequence	2.5	Sequence 1137 from Patent EP2074227	NA	coding protein	psRNATarget
LQ235142.1	ncRNA:24   UGCUAAAGAUCACCGCCAAAA-AAU   1   |=|||||||||||||||||||-||| targets:7   AUGAUUUCUAGUGGCGGUUUUCUUA   31 Target Full Sequence	3.0	Sequence 1137 from Patent EP2985353	NA	coding protein	psRNATarget
LQ235142.1	ncRNA:24   UGCUAAAGAUCACCGCCAAAAAAU   1   |=|||||=|||||*|||||||||| targets:98   AUGAUUUUUAGUGACGGUUUUUUA   121 Target Full Sequence	2.5	Sequence 1137 from Patent EP2985353	NA	coding protein	psRNATarget
JB163473.1	ncRNA:24   UGCUAAAGAUCACCGCCAAAA-AAU   1   |=|||||||||||||||||||-||| targets:7   AUGAUUUCUAGUGGCGGUUUUCUUA   31 Target Full Sequence	3.0	Sequence 1137 from Patent EP2559767	NA	coding protein	psRNATarget
JB163473.1	ncRNA:24   UGCUAAAGAUCACCGCCAAAAAAU   1   |=|||||=|||||*|||||||||| targets:98   AUGAUUUUUAGUGACGGUUUUUUA   121 Target Full Sequence	2.5	Sequence 1137 from Patent EP2559767	NA	coding protein	psRNATarget
HI403026.1	ncRNA:24   UGCUAAAGAUCACCGCCAAAA-AAU   1   *||||||||||||||||||||-||| targets:7   UCGAUUUCUAGUGGCGGUUUUCUUA   31 Target Full Sequence	3.0	Sequence 1151 from Patent EP2074227	NA	coding protein	psRNATarget
LQ235156.1	ncRNA:24   UGCUAAAGAUCACCGCCAAAA-AAU   1   *||||||||||||||||||||-||| targets:7   UCGAUUUCUAGUGGCGGUUUUCUUA   31 Target Full Sequence	3.0	Sequence 1151 from Patent EP2985353	NA	coding protein	psRNATarget
JB163487.1	ncRNA:24   UGCUAAAGAUCACCGCCAAAA-AAU   1   *||||||||||||||||||||-||| targets:7   UCGAUUUCUAGUGGCGGUUUUCUUA   31 Target Full Sequence	3.0	Sequence 1151 from Patent EP2559767	NA	coding protein	psRNATarget
LQ235184.1	ncRNA:24   UGCUAAAGAUCACCGCCAAAA-AAU   1   **|||||||||||||||||||-||| targets:32   UAGAUUUCUAGUGGCGGUUUUCUUA   56 Target Full Sequence	3.0	Sequence 1179 from Patent EP2985353	NA	coding protein	psRNATarget
JB163515.1	ncRNA:24   UGCUAAAGAUCACCGCCAAAA-AAU   1   **|||||||||||||||||||-||| targets:32   UAGAUUUCUAGUGGCGGUUUUCUUA   56 Target Full Sequence	3.0	Sequence 1179 from Patent EP2559767	NA	coding protein	psRNATarget
HI403054.1	ncRNA:24   UGCUAAAGAUCACCGCCAAAA-AAU   1   **|||||||||||||||||||-||| targets:32   UAGAUUUCUAGUGGCGGUUUUCUUA   56 Target Full Sequence	3.0	Sequence 1179 from Patent EP2074227	NA	coding protein	psRNATarget
XM_008646578.2	ncRNA:24   UGC--UAAAGAUCACCGCCAAAAAAU   1   |=|--|||||||*|||=||||||||| targets:460   AUGUUAUUUCUAUUGGUGGUUUUUUA   485 Target Full Sequence	2.5	PREDICTED: Zea mays hypothetical protein (LOC103626185), mRNA	NA	coding protein	psRNATarget
LQ238012.1	ncRNA:24   UGCUAAAGAUCACCGCCAAAAAAU   1   =|*||||=||||||||||||*||| targets:11   GCUAUUUUUAGUGGCGGUUUAUUA   34 Target Full Sequence	2.5	Sequence 4007 from Patent EP2985353	NA	coding protein	psRNATarget
HI405882.1	ncRNA:24   UGCUAAAGAUCACCGCCAAAAAAU   1   =|*||||=||||||||||||*||| targets:11   GCUAUUUUUAGUGGCGGUUUAUUA   34 Target Full Sequence	2.5	Sequence 4007 from Patent EP2074227	NA	coding protein	psRNATarget
JB166343.1	ncRNA:24   UGCUAAAGAUCACCGCCAAAAAAU   1   =|*||||=||||||||||||*||| targets:11   GCUAUUUUUAGUGGCGGUUUAUUA   34 Target Full Sequence	2.5	Sequence 4007 from Patent EP2559767	NA	coding protein	psRNATarget