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BaseInfo

ncRNA ID novel_zma_miR11259
Species Zea mays
Class miRNA
Genome position Chr9:141704747-141704841 [+]
Reference genome RefGen_v4
Source SRR5100248;SRR1583942
Length 24
Mature sequence(if miRNA) 1 - AAGAAAACCGUCACUAGAAAUCGU - 24
Stem-loop(if miRNA) AA        UC           UAUUCCAUA        U         U
  GAAAACCG  ACUAGAAAUCG         AUUUCUAC GGUGGUUUU U
  ||||||||  |||||||||||         |||||||| |||||||||
  UUUUUGGC  UGAUCUUUAGC         UAAAGAUG CCGCCAAGG A
AA        GA           ---------        U         A
Stem-loop sequence AAGAAAACCGUCACUAGAAAUCGUAUUCCAUAAUUUCUACUGGUGGUUUUUUAAGGAACCGCCUGUAGAAAUCGAUUUCUAGUAGCGGUUUUUAA

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
LQ235114.1
ncRNA:24   UGCUAAAGAUCACUGCCAAAAGAA   1
  |=|||||||||||=||||||||||
targets:79   AUGAUUUCUAGUGGCGGUUUUCUU   102

1.5 Sequence 1109 from Patent EP2985353 NA coding protein psRNATarget
HI402984.1
ncRNA:24   UGCUAAAGAUCACUGCCAAAAGAA   1
  |=|||||||||||=||||||||||
targets:79   AUGAUUUCUAGUGGCGGUUUUCUU   102

1.5 Sequence 1109 from Patent EP2074227 NA coding protein psRNATarget
JB163445.1
ncRNA:24   UGCUAAAGAUCACUGCCAAAAGAA   1
  |=|||||||||||=||||||||||
targets:79   AUGAUUUCUAGUGGCGGUUUUCUU   102

1.5 Sequence 1109 from Patent EP2559767 NA coding protein psRNATarget
HI403012.1
ncRNA:24   UGCUAAAGAUCACUGCCAAAAGAA   1
  |=|||||||||||=||||||||||
targets:7   AUGAUUUCUAGUGGCGGUUUUCUU   30

1.5 Sequence 1137 from Patent EP2074227 NA coding protein psRNATarget
JB163473.1
ncRNA:24   UGCUAAAGAUCACUGCCAAAAGAA   1
  |=|||||||||||=||||||||||
targets:7   AUGAUUUCUAGUGGCGGUUUUCUU   30

1.5 Sequence 1137 from Patent EP2559767 NA coding protein psRNATarget
LQ235142.1
ncRNA:24   UGCUAAAGAUCACUGCCAAAAGAA   1
  |=|||||||||||=||||||||||
targets:7   AUGAUUUCUAGUGGCGGUUUUCUU   30

1.5 Sequence 1137 from Patent EP2985353 NA coding protein psRNATarget
HI403026.1
ncRNA:24   UGCUAAAGAUCACUGCCAAAAGAA   1
  *||||||||||||=||||||||||
targets:7   UCGAUUUCUAGUGGCGGUUUUCUU   30

1.5 Sequence 1151 from Patent EP2074227 NA coding protein psRNATarget
LQ235156.1
ncRNA:24   UGCUAAAGAUCACUGCCAAAAGAA   1
  *||||||||||||=||||||||||
targets:7   UCGAUUUCUAGUGGCGGUUUUCUU   30

1.5 Sequence 1151 from Patent EP2985353 NA coding protein psRNATarget
JB163487.1
ncRNA:24   UGCUAAAGAUCACUGCCAAAAGAA   1
  *||||||||||||=||||||||||
targets:7   UCGAUUUCUAGUGGCGGUUUUCUU   30

1.5 Sequence 1151 from Patent EP2559767 NA coding protein psRNATarget
LQ235116.1
ncRNA:24   UGCUAAAGAUCACUGCCAAAAGAA   1
  |=|||||=|||||=||||||||||
targets:79   AUGAUUUUUAGUGGCGGUUUUCUU   102

2.5 Sequence 1111 from Patent EP2985353 NA coding protein psRNATarget
JB163447.1
ncRNA:24   UGCUAAAGAUCACUGCCAAAAGAA   1
  |=|||||=|||||=||||||||||
targets:79   AUGAUUUUUAGUGGCGGUUUUCUU   102

2.5 Sequence 1111 from Patent EP2559767 NA coding protein psRNATarget
HI402986.1
ncRNA:24   UGCUAAAGAUCACUGCCAAAAGAA   1
  |=|||||=|||||=||||||||||
targets:79   AUGAUUUUUAGUGGCGGUUUUCUU   102

2.5 Sequence 1111 from Patent EP2074227 NA coding protein psRNATarget
HI403054.1
ncRNA:24   UGCUAAAGAUCACUGCCAAAAGAA   1
  **|||||||||||=||||||||||
targets:32   UAGAUUUCUAGUGGCGGUUUUCUU   55

1.5 Sequence 1179 from Patent EP2074227 NA coding protein psRNATarget
JB163515.1
ncRNA:24   UGCUAAAGAUCACUGCCAAAAGAA   1
  **|||||||||||=||||||||||
targets:32   UAGAUUUCUAGUGGCGGUUUUCUU   55

1.5 Sequence 1179 from Patent EP2559767 NA coding protein psRNATarget
LQ235184.1
ncRNA:24   UGCUAAAGAUCACUGCCAAAAGAA   1
  **|||||||||||=||||||||||
targets:32   UAGAUUUCUAGUGGCGGUUUUCUU   55

1.5 Sequence 1179 from Patent EP2985353 NA coding protein psRNATarget
EU943186.1
ncRNA:24   UGCUAAAGAUCACUGCCAAAAGAA   1
  |=|||||*|||||=||||||||||
targets:1966   AUGAUUUGUAGUGGCGGUUUUCUU   1989

2.5 Zea mays clone 1582065 mRNA sequence NA coding protein psRNATarget
AY109131.2
ncRNA:24   UGCUAAAGA-UCACUGCCAAAAGAA   1
  *||**||||-||||||||||||||*
targets:329   UCGUCUUCUGAGUGACGGUUUUCUG   353

3.0 Zea mays PCO093490 mRNA sequence NA coding protein psRNATarget
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