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BaseInfo

ncRNA ID	novel_zma_miR11252
Species	Zea mays
Class	miRNA
Genome position	Chr9:10158232-10158296 [+]
Reference genome	RefGen_v4
Source	SRR5100248
Length	22
Mature sequence(if miRNA)	1 - GAGACACUCGGCAAAGAGCCUG - 22
Stem-loop(if miRNA)	-- A                    ACA     A   G GACACUCGGCAAAGAGCCUG   UGGGG C   | ||||||||||||||||||||   ||||| C   C CUGUGAGCCGUUUCUCGGGC   GUCCC C AA C                    --G     U
Stem-loop sequence	GAGACACUCGGCAAAGAGCCUGACAUGGGGACCCUCCCUGGCGGGCUCUUUGCCGAGUGUCCCAA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
EU949560.1	ncRNA:22   GUCCGAGAAACGGCUCACAGAG   1   |=*|=||||||||||||||||* targets:504   CGCGUUCUUUGCCGAGUGUCUA   525 Target Full Sequence	2.0	Zea mays clone 424771 mRNA sequence	NA	coding protein	psRNATarget
BT035133.1	ncRNA:22   GUCCGAGAAACGGCUCACAGAG   1   =*||||||||||||||||||** targets:1295   UCGGCUCUUUGCCGAGUGUCAA   1316 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0041G19 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001138164.1	ncRNA:22   GUCCGAGAAACGGCUCACAGAG   1   =*||||||||||||||||||** targets:1295   UCGGCUCUUUGCCGAGUGUCAA   1316 Target Full Sequence	2.5	Zea mays OSIGBa0147B06.5 protein (LOC100192993), mRNA	NA	coding protein	psRNATarget
XM_008668897.2	ncRNA:22   GUCCGAGAAACGGCUCACAGAG   1   =*||||||||||||||||||** targets:1243   UCGGCUCUUUGCCGAGUGUCAA   1264 Target Full Sequence	2.5	PREDICTED: Zea mays OSIGBa0147B06.5 protein (LOC100192993), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_020547384.1	ncRNA:22   GUCCGAGAAACGGCUCACAGAG   1   =*||||||||||||||||||** targets:1256   UCGGCUCUUUGCCGAGUGUCAA   1277 Target Full Sequence	2.5	PREDICTED: Zea mays OSIGBa0147B06.5 protein (LOC100192993), transcript variant X1, mRNA	NA	coding protein	psRNATarget
NM_001152461.1	ncRNA:22   GUCCGAGAAACGGCUCACAGAG   1   |=*|=||||||||||||||||* targets:804   CGUGUUCUUUGCCGAGUGUCUA   825 Target Full Sequence	2.0	Zea mays uncharacterized LOC100279456 (IDP836), mRNA	NA	coding protein	psRNATarget
BT054268.1	ncRNA:22   GUCCGAGAAACGGCUCACAGAG   1   |=*|=||||||||||||||||* targets:804   CGUGUUCUUUGCCGAGUGUCUA   825 Target Full Sequence	2.0	Zea mays full-length cDNA clone ZM_BFb0206G23 mRNA, complete cds	NA	coding protein	psRNATarget
BT042352.1	ncRNA:22   GUCCGAGAAACGGCUCACAGAG   1   =**|||||||||||||||||*= targets:1201   UUAGCUCUUUGCCGAGUGUCAU   1222 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0207J05 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001148473.2	ncRNA:22   GUCCGAGAAACGGCUCACAGAG   1   =**|||||||||||||||||*= targets:1251   UUAGCUCUUUGCCGAGUGUCAU   1272 Target Full Sequence	2.5	Zea mays Protein CHLORORESPIRATORY REDUCTION 6 chloroplastic (si707021b11), mRNA	NA	coding protein	psRNATarget