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BaseInfo

ncRNA ID	novel_zma_miR11250
Species	Zea mays
Class	miRNA
Genome position	Chr8:149456425-149456539 [+]
Reference genome	RefGen_v4
Source	SRR1997865
Length	24
Mature sequence(if miRNA)	1 - GCAGCCUCUCACAAAAAUAAGGAU - 24
Stem-loop(if miRNA)	--    C             A     A  U       UG      --C    AG    GU   GCAG CUCUCACAAAAAU AGGAU GA CUCUACC  CAGGUC   AGCA  UAAC  U   |||| ||||||||||||| ||||| || |||||||  ||||||   ||||  ||||   CGUC GGGAGUGUUUUUA UCCUA CU GGGGUGG  GUCCAG   UUGU  GUUG  U AA    A             C     -  U       GU      UUA    --    AU
Stem-loop sequence	GCAGCCUCUCACAAAAAUAAGGAUAGAUCUCUACCUGCAGGUCCAGCAAGUAACGUUUUAGUUGUGUUAUUGACCUGUGGGUGGGGUUCAUCCUCAUUUUUGUGAGGGACUGCAA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_020545800.1	ncRNA:24   UAGGAAUAAAAACACUCUCCGACG   1   |||||||||||||||||=|||||| targets:965   AUCCUUAUUUUUGUGAGGGGCUGC   988 Target Full Sequence	1.5	PREDICTED: Zea mays embryo sac development arrest 6 (LOC103641842), mRNA	NA	coding protein	psRNATarget
LQ235473.1	ncRNA:24   UAGGAAUAAAAACACUCUCCGACG   1   |||||*|||||||||||=|||||| targets:159   AUCCUCAUUUUUGUGAGGGGCUGC   182 Target Full Sequence	2.5	Sequence 1468 from Patent EP2985353	NA	coding protein	psRNATarget
HI403343.1	ncRNA:24   UAGGAAUAAAAACACUCUCCGACG   1   |||||*|||||||||||=|||||| targets:159   AUCCUCAUUUUUGUGAGGGGCUGC   182 Target Full Sequence	2.5	Sequence 1468 from Patent EP2074227	NA	coding protein	psRNATarget
JB163804.1	ncRNA:24   UAGGAAUAAAAACACUCUCCGACG   1   |||||*|||||||||||=|||||| targets:159   AUCCUCAUUUUUGUGAGGGGCUGC   182 Target Full Sequence	2.5	Sequence 1468 from Patent EP2559767	NA	coding protein	psRNATarget
XM_020542106.1	ncRNA:24   UAGGAAUAAAAACACUCUCCGACG   1   |||||*|||||||||||=|||||| targets:1164   AUCCUCAUUUUUGUGAGGGGCUGC   1187 Target Full Sequence	2.5	PREDICTED: Zea mays protein binding protein (LOC100281612), transcript variant X3, mRNA	NA	coding protein	psRNATarget
XM_020542107.1	ncRNA:24   UAGGAAUAAAAACACUCUCCGACG   1   |||||*|||||||||||=|||||| targets:1167   AUCCUCAUUUUUGUGAGGGGCUGC   1190 Target Full Sequence	2.5	PREDICTED: Zea mays protein binding protein (LOC100281612), transcript variant X4, mRNA	NA	coding protein	psRNATarget
XM_020542104.1	ncRNA:24   UAGGAAUAAAAACACUCUCCGACG   1   |||||*|||||||||||=|||||| targets:1313   AUCCUCAUUUUUGUGAGGGGCUGC   1336 Target Full Sequence	2.5	PREDICTED: Zea mays protein binding protein (LOC100281612), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_020542105.1	ncRNA:24   UAGGAAUAAAAACACUCUCCGACG   1   |||||*|||||||||||=|||||| targets:1317   AUCCUCAUUUUUGUGAGGGGCUGC   1340 Target Full Sequence	2.5	PREDICTED: Zea mays protein binding protein (LOC100281612), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_008657979.2	ncRNA:24   UAGGAAUAAAAACACUCUCCGACG   1   ||=||**||||||||||||||||| targets:1470   AUUCUCCUUUUUGUGAGAGGCUGC   1493 Target Full Sequence	2.0	PREDICTED: Zea mays annexin-like protein RJ4 (LOC103635552), mRNA	NA	coding protein	psRNATarget