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BaseInfo

ncRNA ID	novel_zma_miR11242
Species	Zea mays
Class	miRNA
Genome position	Chr9:100144485-100144573 [+]
Reference genome	RefGen_v4
Source	SRR5100248
Length	21
Mature sequence(if miRNA)	69 - AUCACUUGGGAAAAUGGGGUU - 89
Stem-loop(if miRNA)	--             UGG                       AUG   CUCCAUUUUCCUA   GAUUUCUAUUUUCCCAAGGGAAA   A   |||||||||||||   |||||||||||||||||||||||   A   GGGGUAAAAGGGU   CUAAAGAUAAAAGGGUUCCCUUU   C UU             UCA                       AAU
Stem-loop sequence	CUCCAUUUUCCUAUGGGAUUUCUAUUUUCCCAAGGGAAAAUGAACUAAUUUCCCUUGGGAAAAUAGAAAUCACUUGGGAAAAUGGGGUU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_008660377.2	ncRNA:21   UUGGGGUAAAAGGGUUCACUA   1   ||||||||||||=|||||||| targets:566   AACCCCAUUUUCUCAAGUGAU   586 Target Full Sequence	1.5	PREDICTED: Zea mays cell growth defect factor 2 (LOC100282436), transcript variant X1, mRNA	NA	coding protein	psRNATarget
BT069551.1	ncRNA:21   UUGGGGUAAAAGGGUUCACUA   1   ||||=||||||=||||||||| targets:243   AACCUCAUUUUUCCAAGUGAU   263 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0167A20 mRNA, complete cds	NA	coding protein	psRNATarget
BT036076.1	ncRNA:21   UUGGGGUAAAAGGGUUCACUA   1   |||||||||||||||||*||| targets:799   AACCCCAUUUUCCCAAGGGAU   819 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFb0094C03 mRNA, complete cds	NA	coding protein	psRNATarget
XM_020547422.1	ncRNA:21   UUGGGGUAAAAGGGUUCACUA   1   |||||||||||||||||*||| targets:2278   AACCCCAUUUUCCCAAGGGAU   2298 Target Full Sequence	1.5	PREDICTED: Zea mays 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (LOC100193732), transcript variant X6, mRNA	NA	coding protein	psRNATarget
XM_020552563.1	ncRNA:21   UUGGGGUAAAAGGGUUCACUA   1   |||||||||||||||||*||| targets:374   AACCCCAUUUUCCCAAGGGAU   394 Target Full Sequence	1.5	PREDICTED: Zea mays probable alpha,alpha-trehalose-phosphate synthase [UDP-forming] 10 (LOC103653427), transcript variant X2, mRNA	NA	coding protein	psRNATarget
EU950786.1	ncRNA:21   UUGGGGUAAAAGGGUUCACUA   1   ||||=||||||||||||*||| targets:300   AACCUCAUUUUCCCAAGGGAU   320 Target Full Sequence	2.5	Zea mays clone 622889 mRNA sequence	NA	coding protein	psRNATarget
HI406263.1	ncRNA:21   UUGGGGUAAAAGGGUUCACUA   1   ||||*||||||||||||*||| targets:24   AACCACAUUUUCCCAAGAGAU   44 Target Full Sequence	2.5	Sequence 4388 from Patent EP2074227	NA	coding protein	psRNATarget
JB166724.1	ncRNA:21   UUGGGGUAAAAGGGUUCACUA   1   ||||*||||||||||||*||| targets:24   AACCACAUUUUCCCAAGAGAU   44 Target Full Sequence	2.5	Sequence 4388 from Patent EP2559767	NA	coding protein	psRNATarget
LQ238393.1	ncRNA:21   UUGGGGUAAAAGGGUUCACUA   1   ||||*||||||||||||*||| targets:24   AACCACAUUUUCCCAAGAGAU   44 Target Full Sequence	2.5	Sequence 4388 from Patent EP2985353	NA	coding protein	psRNATarget
BT068291.1	ncRNA:21   UUGGGGUAAAAGGGUUCACUA   1   |||*|||||||||||||*||| targets:1169   AACACCAUUUUCCCAAGGGAU   1189 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0098O13 mRNA, complete cds	NA	coding protein	psRNATarget