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BaseInfo

ncRNA ID novel_zma_miR11236
Species Zea mays
Class miRNA
Genome position Chr9:72039563-72039638 [+]
Reference genome RefGen_v4
Source SRR5100248;SRR5100255
Length 24
Mature sequence(if miRNA) 1 - AAACUGUAACGCCCUGAAUUUGGG - 24
Stem-loop(if miRNA) ----AAACU         U          -U    UUUUU
         GUAACGCCC GAAUUUGGGG  AGAA     U
         ||||||||| ||||||||||  ||||
         CAUUGCGGG CUUAAACCUC  UCUU     C
CUUUUCUCU         -          UC    UUCUU
Stem-loop sequence AAACUGUAACGCCCUGAAUUUGGGGUAGAAUUUUUUCUUCUUUUCUCUCUCCAAAUUCGGGCGUUACUCUCUUUUC

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_020539096.1
ncRNA:24   GGGUUUAAGUCCCGCAAUGUCAAA   1
  |**|=|||||*||||||||||*||
targets:788   CAGAGAUUCAUGGCGUUACAGAUU   811

2.5 PREDICTED: Zea mays AP3-complex subunit beta-A (LOC100383432), transcript variant X2, mRNA NA coding protein psRNATarget
NM_001351147.1
ncRNA:24   GGGUUUAAGUCCCGCAAUGUCAAA   1
  |**|=|||||*||||||||||*||
targets:966   CAGAGAUUCAUGGCGUUACAGAUU   989

2.5 Zea mays AP3-complex subunit beta-A (LOC100383432), mRNA NA coding protein psRNATarget